BAC Information

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BAC

Clone NameMSMg01-409F17
Chromosome9 (Build37)
Map Location 65,192,402 - 65,192,817
singlet/doubletsinglet
Overlap genenone
Upstream geneMegf11, Rab11a, AI115600, F730015K02Rik, Slc24a1, 2010321M09Rik, Ptplad1, Dpp8, Nope, Punc, Parp16, Cilp, Clpx
Downstream genePdcd7, Gm514, 5430433E21Rik, Rasl12, Ostb, Mtfmt, Spg21, Ankdd1a, Plekhq1, Pif1, LOC100041121, Rbpms2, Oaz2, Zfp609, LOC100041180, Trip4, 2810417H13Rik, Csnk1g1, Ppib, Snx22, Snx1, 5730536A07Rik, Dapk2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-409F17.T7 (MSMg01no409_f17.b1)MSMg01-409F17.TJ (MSMg01no409_f17.g1)
ACCAG506861AG506862
length799778
length of high quality
(start - end)		421 (49 - 469)436 (77 - 512)
definitionCHROMAT_FILE: MSMg01no409_f17.b1 PHD_FILE: MSMg01no409_f17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:25:41 2005CHROMAT_FILE: MSMg01no409_f17.g1 PHD_FILE: MSMg01no409_f17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:25:41 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNACTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCCACACCCCTAAGCTCCTTACCCCATAAAAACCCCTAGCTTTC
GAGCCTTGTGGCCAACATCCGTTATCTCCTGTGTGGGATGCATGTTGGTC
CGGAACCCCATCATTAAACTACCTTGTGTGTTTACATCAAAGACGGTCTA
TTCGTGATTTTTTGGGTTTTGGGTGCACACCAAATCGGGAATTGAGTGGG
GGTTTCCCCACTAGGTTCTATCAATATGACATATGGACACTGTAACATCT
ATCTCTCCAAGACCACCTAGCTTCTCTTTGTGTTTCTGTGTTTTACACCC
TGCGTTCTTTCGACCCCCAGCAGACATACTGCAAATCACTAGTACCTGTT
GCTTCCATCCTGTGTTCCTCTCATAACTTTTTGTTGTCTTTCAGATCTTA
GCCGGAGCTTCAGACCGTGTCTCTAGTCCCTCTATAACGTTAAAAATCAT
CAGGATTTCTGAATTCCAGACTGATTTGGAGAGTCCAATCCTACTCCATC
TTGGGTACAGCCTCCTTCTTCCTCAAAAAAAAAAAGTAGAAATTTGTTTG
GCTCATAATAATCTAAAGGTTCCCTTGTGTTGCACTTGGCTTCAAATTTT
CTCTAGCTACTTTCTATCTATGTGTTTTAATTAAATATCTTATTGTCTAC
TAATATACTCTCACCTTATCGAGTCCATATCCCCTCCTCATTCCCCCTAT
TCTTGTCCTTTATTAATCCTTTTATCTCCCGCCACACTTCATAATACTA

CCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCAGGCTTATGTAGAAAGGCACTGT
CTCAAAAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAATA
AATAAATAAATAAATAAATAAATAAATAAAATGTATAAATAAAACAAAGG
GCCGGACTTAGCTCAGTTGGTAGAGTGTGTGCCCAGCATGCAGGAAGGTG
GCCTTGATCCCCAGCGCCACACAGACTGGATATTGTGGTCAACACTGTAC
TCTCAGCACTTAGCGGGTGGAGGCAGAAAGATTAGGAGTTCAAGTTTATC
CTCAGGTTACATAGGGATTTTGAGGCCAATGTGAGCTATAGGAGACCCTG
TCTGATACAAAAACAAAAAACAGAAACACCCTCACCCCTGCCCCTTCCCC
CAAAACAACAACAAACAAAACCCAACAACAAACAGATGGAGGAAGTACCT
TCTGATGAAATACCACGTCTGTGAAAGCTCCCCCAACACCCAGCAAGTCT
TGGGATTTGGTGCNCCAAGGAAAAGGAACACTGCAAGTGATACTGTGGAA
AAAGTATTGTACCATCTTAATGGTGGCTCGGGTTATCCTTTATAGTCCTT
TTTCTCATACGATTTATTTTTTATTCTTTTTATTTCTCCAAACTCTATTC
TTTCATTTTTCTTTCTATTATTTCTTTCTATTTCTACTTTATTCCCCACT
TTATCTTTCTATTTTTTTTTCTTTATAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no409_f17.b1 MSMg01no409_f17.b1 CHROMAT_FILE:
MSMg01no409_f17.b1 PHD_FILE: MSMg01no409_f17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:25:41 2005
         (421 letters)



>mm_chr9_65192197_65193017
          Length = 821

 Score =  783 bits (405), Expect = 0.0
 Identities = 414/417 (99%), Gaps = 1/417 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccacacccctaagctccttaccccataaaaacccctagctttcgagccttgtggc 64
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 206 gaattccacacccctaagctccttaccccataaaaacccctagctttcgagcct-gtggc 264

                                                                       
Query: 65  caacatccgttatctcctgtgtgggatgcatgttggtccggaaccccatcattaaactac 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 caacatccgttatctcctgtgtgggatgcatgttggtccggaaccccatcattaaactac 324

                                                                       
Query: 125 cttgtgtgtttacatcaaagacggtctattcgtgattttttgggttttgggtgcacacca 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 cttgtgtgtttacatcaaagacggtctattcgtgattttttgggttttgggtgcacacca 384

                                                                       
Query: 185 aatcgggaattgagtgggggtttccccactaggttctatcaatatgacatatggacactg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aatcgggaattgagtgggggtttccccactaggttctatcaatatgacatatggacactg 444

                                                                       
Query: 245 taacatctatctctccaagaccacctagcttctctttgtgtttctgtgttttacaccctg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 taacatctatctctccaagaccacctagcttctctttgtgtttctgtgttttacaccctg 504

                                                                       
Query: 305 cgttctttcgacccccagcagacatactgcaaatcactagtacctgttgcttccatcctg 364
           | |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 505 cattctttcgacccccagcagacatactgcaaatcactagtacctgctgcttccatcctg 564

                                                                    
Query: 365 tgttcctctcataactttttgttgtctttcagatcttagccggagcttcagaccgtg 421
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tgttcctctcataactttttgttgtctttcagatcttagccggagcttcagaccgtg 621


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 421
Length of database: 821
Length adjustment: 9
Effective length of query: 412
Effective length of database: 812
Effective search space:   334544
Effective search space used:   334544
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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