Query= MSMg01no409_h18.b1 MSMg01no409_h18.b1 CHROMAT_FILE:
MSMg01no409_h18.b1 PHD_FILE: MSMg01no409_h18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:25:52 2005
(459 letters)
>mm_chr9_65982923_65983781
Length = 859
Score = 754 bits (390), Expect = 0.0
Identities = 445/482 (92%), Gaps = 31/482 (6%)
Strand = Plus / Plus
Query: 5 gaattcagtcaccttgcttgtatggcaagcacttctacgtactgagccgtctcaccagcc 64
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 182 gaattcagtcaccaggcttgtatggcaagcacttctacgtactgagccgtctcaccagcc 241
Query: 65 gagttttgtggttttaaaagaaactgaactaagtggggcgtggtgtgcacatctttgatc 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 gagttttgtggttttaaaagaaactgaactaagtggggcgtggtgtgcacatctttgatc 301
Query: 125 ccagcacttggatctctgagtttgaggctggcctggtctacaaagtaagttccagggtgc 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 ccagcacttggatctctgagtttgaggctggcctggtctacaaagtaagttccagggtgc 361
Query: 185 ccagggctgttacacagagaaaccttgacttgaaaaactgagaga----cagacagacag 240
|||||||||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct: 362 ccagggctgttacacagagaaaccttgacttgaaaagctgagagagagacagacagacag 421
Query: 241 gcagacagacaggtaggtacacacagagagagagagatatttt----------------- 283
||||||||||||||||||||||| ||||||||||||| |
Sbjct: 422 gcagacagacaggtaggtacacagagagagagagagaga----gacagagacagagacag 477
Query: 284 ------atacagagacagagactctgagttgaactagacggtctctaaggtccctattag 337
| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 agacagagacagagacagagactctgagttgaactagacggtctctaaggtccctattag 537
Query: 338 ctataattgttctgttttcctcttgaaaactcttgatctctgggccgactctgtgctgcc 397
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 ctataattgttctgttttcctcttgaaaactcttgatctctgggccgactctgtgctgcc 597
Query: 398 ctctgcacaggctggctttggcctcagcctcagccacaggatttgcagcagttttgtggt 457
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 ctctgcacaggctggctttggcctcagcctcagccacaggatttgcagcagttttgtggt 657
Query: 458 tg 459
||
Sbjct: 658 tg 659
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 459
Length of database: 859
Length adjustment: 10
Effective length of query: 449
Effective length of database: 849
Effective search space: 381201
Effective search space used: 381201
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no409_h18.g1 MSMg01no409_h18.g1 CHROMAT_FILE:
MSMg01no409_h18.g1 PHD_FILE: MSMg01no409_h18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:25:52 2005
(396 letters)
>mm_chr10_91183532_91184327
Length = 796
Score = 667 bits (345), Expect = 0.0
Identities = 381/393 (96%)
Strand = Plus / Plus
Query: 4 ggtgacaggtagcgagcaatctgtattgttaagaaaattctcaggcatgctaccttaccc 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggtgacaggtagcgagcaatctgtattgttaagaaaattctcaggcatgctaccttaccc 263
Query: 64 tgtggggggaaaatcggtggagcatgtctggcaggaagtaccaaggaagcatgccttatt 123
|||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 264 tgtgggggaaaaatcggtggagtatgtctggcaggaagtaccaaggaagcatgccttatt 323
Query: 124 tatatgaaaacagccacgttgttgatgcaatattcagttcaatggcttagctctgactct 183
|||||||||||||||||||||||||||||| ||||||| |||| ||||||||||||||||
Sbjct: 324 tatatgaaaacagccacgttgttgatgcaacattcagtccaatcgcttagctctgactct 383
Query: 184 cctgtcaaccaaaattggggctaagtcgttgtagaggcacgggaatgtctttccaagggg 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 cctgtcaaccaaaattggggctaagtcgttgtagaggcacgggaatgtctttccaagggg 443
Query: 244 tccaagtgctaatcactgttacttgcaaaactatgtaagattcctgacagaggagaagag 303
|||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||
Sbjct: 444 tccaagtgctaatcactggtacttgcaaatctatgtaagattcctgacagaggagaagag 503
Query: 304 accccacagctggaaggagtcaagttttttgagagagagagactatgctggaatatcttc 363
||||||||||| ||||| |||||| ||||||||||||||||| |||||||||||||||||
Sbjct: 504 accccacagcttgaaggtgtcaaggtttttgagagagagagattatgctggaatatcttc 563
Query: 364 agacatcgctgccatcacaaggacccttctcag 396
||||||| |||||||||||||||||||||||||
Sbjct: 564 agacatcactgccatcacaaggacccttctcag 596
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 396
Length of database: 796
Length adjustment: 9
Effective length of query: 387
Effective length of database: 787
Effective search space: 304569
Effective search space used: 304569
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
