BAC Information

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BAC

Clone NameMSMg01-409L06
Chromosome9 (Build37)
Map Location 91,433,669 - 91,434,004
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039925, EG434428, LOC621576, Zic1, Zic4
Downstream geneLOC331000, Plscr1, Plscr2, 1700057G04Rik, LOC666850, Plscr4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-409L06.T7 (MSMg01no409_l06.b1)MSMg01-409L06.TJ (MSMg01no409_l06.g1)
ACCAG507125AG507126
length797789
length of high quality
(start - end)		451 (45 - 495)336 (67 - 402)
definitionCHROMAT_FILE: MSMg01no409_l06.b1 PHD_FILE: MSMg01no409_l06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:26:09 2005CHROMAT_FILE: MSMg01no409_l06.g1 PHD_FILE: MSMg01no409_l06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:26:10 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCATGGCCCATACCTAGACATGATAAAAGAAATCTACAGCAAACCAGT
AGCCAACATCAAAGTAAATGGTGAGAAGCTGGAAGCAATCCCACTAAAAT
CAGGGACTAGACAAGGTTGCACACTTTCTCCATACCTATTCAGCATTGTA
TTTGAAGTCCTAGCCAGAGAAATTTGACAACAAAGGGAGATCAAGGGGAT
ACAATTTTGAAAGAAAGAAGTCACAATATCACATTTTGCAGATGATATGA
TAGTATATGTAAGTGTCCCTGAAAGTTCCACCAGAGAACTCCTGAGCCTG
ATAAACAACTTCAATGAAGTAGCTGGATATAAAATTTACTCAAACAAGTC
AATGGCCTTTCTCTACACAAAGAATAAAAGGCTGAGAAAGAAATTAGGGA
AACAACACCCTTCTCAATAGTCACAAATAATATAAAATATCTTGGTGTGA
CTCTAAGTAAGGAAGTGAAAGATCTGTGTGATAAGAATTTCAAGTCTCTG
AAAAAAGAATTTAAAGAAGATCTCAGAAGATGGAAAGATCTCTCCATGTT
CATGGATTGAACGGAACAACTTTGTTAAAATGGGTATCTTGTCCCAAGCT
ACTTTCGATTTCTGGTGTCCCCTTTTCAATTTCCTCTTTAATTCTTCCTA
GTTATTATATGTGTTACCTCGCTTTTCCCCTTCGGATATACTCATACCTC
CGTTATTTTTTACTTCTTCTCCTGTAGCTTAATCTTTCCTTCCGTTN

TGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXTAGATGGTGGTATGATATTTACAAATAGTGTAAT
ATTCTCATTATGACCTAACAATTCAACTCCTAGACATTACCATAAAAAAA
TGAAACACATTCCTATTCAAACCTACACACGGTTGCTTATAGCCACTGCA
CTTTGGCTTTTCAAACTAGAAAATTTTCTTTAGAGGGGAAATTAAATGAA
CCATATTTATGACATTTCTAAGGAGCAAAATTATTGTCGCAGAAAAGATC
AGTGGTTATTGAAAATTAAAAGTTAGAGTGAGTGCACAGAAATAACGTAG
GAAGTTTGAGGGTTGTTGTGATGATTTGTATTCTGGTGGTCACAAAAATG
TGAATCCAGGATAAAATTCATACTACTGTATACTAAGTGGGTTCTACAGC
ATTTTAATTTAATAATACGATTTAAAATAATTTACCAATATACTGGATCC
GATTATAAACTGCTTTTTTATCTAATGTATGTTATCCTTTGGTAGACACT
CCGATTATATTTTTCCTTGGCGCGAATGCCCCTAGTTCGTCTCAGTTTCC
GTCTGTTATCAAGTCCCTTTTTTCTTTTTGCCACCTCTTTTATTTCACTG
TTTATTCCTTATCTCTCATTGCCTTGTTTACCCCCTACTTTATTATTATT
ACTTCTTACATTTCTATACCTATATCTTCTTTCATACTTTTCCTTTCTTC
ACCTTTAGCTATTCGCAGCCACTTCTTCCATCTCTCTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no409_l06.g1 MSMg01no409_l06.g1 CHROMAT_FILE:
MSMg01no409_l06.g1 PHD_FILE: MSMg01no409_l06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:26:10 2005
         (336 letters)



>mm_chr9_91433469_91434204
          Length = 736

 Score =  634 bits (328), Expect = 0.0
 Identities = 334/336 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tagatggtggtatgatatttacaaatagtgtaatattctcattatgacctaacaattcaa 60
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 201 tagatggtggtatgatatttacaaatagcgtaatattctcattatgacctaacaattcaa 260

                                                                       
Query: 61  ctcctagacattaccataaaaaaatgaaacacattcctattcaaacctacacacggttgc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctcctagacattaccataaaaaaatgaaacacattcctattcaaacctacacacggttgc 320

                                                                       
Query: 121 ttatagccactgcactttggcttttcaaactagaaaattttctttagaggggaaattaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttatagccactgcactttggcttttcaaactagaaaattttctttagaggggaaattaaa 380

                                                                       
Query: 181 tgaaccatatttatgacatttctaaggagcaaaattattgtcgcagaaaagatcagtggt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgaaccatatttatgacatttctaaggagcaaaattattgtcgcagaaaagatcagtggt 440

                                                                       
Query: 241 tattgaaaattaaaagttagagtgagtgcacagaaataacgtaggaagtttgagggttgt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 441 tattgaaaattaaaagttagagtgagtgcacagaaataacgtaggaagtttgagggttgg 500

                                               
Query: 301 tgtgatgatttgtattctggtggtcacaaaaatgtg 336
           ||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgtgatgatttgtattctggtggtcacaaaaatgtg 536


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 336
Length of database: 736
Length adjustment: 9
Effective length of query: 327
Effective length of database: 727
Effective search space:   237729
Effective search space used:   237729
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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