Query= MSMg01no410_e07.b1 MSMg01no410_e07.b1 CHROMAT_FILE:
MSMg01no410_e07.b1 PHD_FILE: MSMg01no410_e07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:26:57 2005
(517 letters)
>mm_chr9_116465339_116466255
Length = 917
Score = 938 bits (485), Expect = 0.0
Identities = 509/517 (98%)
Strand = Plus / Plus
Query: 1 gcctgtttcttttgatttggggcattaaagtctctgtacttttgctagggactttccatc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gcctgtttcttttgatttggggcattaaagtctctgtacttttgctagggactttccatc 260
Query: 61 aaggttgttcaccaagtttttgtgcatggctttgaaatttaaatttccccatcatcttcc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaggttgttcaccaagtttttgtgcatggctttgaaatttaaatttccccatcatcttcc 320
Query: 121 cgcatgaaggctgagttaaaaaggcgtatttcacttttctcccttttcccatggctcttg 180
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 321 cgcatgaaggctgagttaaaaaggcatatttcacttttctcccttttcccatggctcttg 380
Query: 181 catctccctttttttcaccattatcttcccccgcattcgggatgtatcagagaaatgttt 240
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 catctcccttttcttcaccattatcttcccccgcattcgggatgtatcagagaaatgttt 440
Query: 241 tactgttgttttcagtgggctctcttcttcccatggctcagttctttatgctcccctgca 300
||||||||| ||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 441 tactgttgtcttcagcgggctctcttcttcccatggctcagttctttacgctcccctgca 500
Query: 301 tattccccgtggagctgataccagaagtaactgcctggccctgtttggaaagggctgcga 360
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tattccccgtggagctgataacagaagtaactgcctggccctgtttggaaagggctgcga 560
Query: 361 tctgttttgtaggttgattatttagctttaataaatagagacacttattagctggccgca 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 561 tctgttttgtaggttgattatttagctttaataaatagagacacttattagctggcctca 620
Query: 421 gtctcttctcccctctgtgggttgcatttcattgctcgttaatgtgtaaatcatggctct 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 621 gtctcttctcccctctgtgggttgcatttcattgctcgttaatgtgtaaatcatgactct 680
Query: 481 ccctaattacacccagatgcggtttccttctggcaca 517
|||||||||||||||||||||||||||||||||||||
Sbjct: 681 ccctaattacacccagatgcggtttccttctggcaca 717
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 517
Length of database: 917
Length adjustment: 10
Effective length of query: 507
Effective length of database: 907
Effective search space: 459849
Effective search space used: 459849
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no410_e07.g1 MSMg01no410_e07.g1 CHROMAT_FILE:
MSMg01no410_e07.g1 PHD_FILE: MSMg01no410_e07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:26:57 2005
(428 letters)
>mm_chr9_116627089_116627916
Length = 828
Score = 756 bits (391), Expect = 0.0
Identities = 419/429 (97%), Gaps = 2/429 (0%)
Strand = Plus / Minus
Query: 1 aaaggcagggggatcagatgttcaaggtcatctttgggtatattgttagtttgctcaaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 715 aaaggcagggggatcagatgttcaaggtcatctttgggtatattgttagtttgcttgaaa 656
Query: 61 ttagagccagtctc--aaaaaaaaaaaaggcttccaagtgtctacagaaatatgaaagga 118
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 655 ttagagccagtctcaaaaaaaaaaaaaaggcttccaagtgtctacagaaatatgaaagga 596
Query: 119 attcataataagacaaatataaatggctggttgacatttctcctttaaaataaattttat 178
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 595 attcataataagacaaatacaaatggctggttgacatttctcctttaaaataaattttat 536
Query: 179 caggagggctttctgactagttaccctcatgtctgtcatggctggagtacagggaggaag 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 535 caggagggctttctgactagttaccctcatgtctgtcatggctggagtacagggagggag 476
Query: 239 ctgaaggagtcggagagctatcaggcagcaaagggaatgtatagctggtgggaagtccca 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 475 ctgaaggagtcggagagctatcaggcagcaaagggaatgtatagctggtgggaagtccca 416
Query: 299 ctctagggtatgtaaggtggctccccctgcctgacaaggaggggaggaaggcaggcactc 358
||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct: 415 ctctagggtatgtaaggtggctctccctgactgacaaggaggggaggaaggcaggcactc 356
Query: 359 agggaaaagggtaagcttctctttcatctgcaggaagtggggtgggggaggccagcctgc 418
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 355 agggaagagggtaagcttctctttcatctgcaggaagtggggtgggggaggccagcgtgc 296
Query: 419 tttcccctg 427
|||||||||
Sbjct: 295 tttcccctg 287
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 428
Length of database: 828
Length adjustment: 9
Effective length of query: 419
Effective length of database: 819
Effective search space: 343161
Effective search space used: 343161
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
