BAC Information

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BAC

Clone NameMSMg01-410H12
Chromosome9 (Build37)
Map Location 66,089,058 - 66,089,299
singlet/doubletsinglet
Overlap geneDapk2
Upstream geneCilp, Clpx, Pdcd7, Gm514, 5430433E21Rik, Rasl12, Ostb, Mtfmt, Spg21, Ankdd1a, Plekhq1, Pif1, LOC100041121, Rbpms2, Oaz2, Zfp609, LOC100041180, Trip4, 2810417H13Rik, Csnk1g1, Ppib, Snx22, Snx1, 5730536A07Rik
Downstream geneHerc1, Fbxl22, Usp3, Car12, Aph1b, LOC623488, Aph1c, Rab8b, Rps27l, Lactb, Tpm1, Tln2
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-410H12.T7 (MSMg01no410_h12.b1)MSMg01-410H12.TJ (MSMg01no410_h12.g1)
ACCAG507710AG507711
length754787
length of high quality
(start - end)
244 (77 - 320)244 (81 - 324)
definitionCHROMAT_FILE: MSMg01no410_h12.b1 PHD_FILE: MSMg01no410_h12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:27:13 2005CHROMAT_FILE: MSMg01no410_h12.g1 PHD_FILE: MSMg01no410_h12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:27:13 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NGGCTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCG
CGGAATTCCAGGCATTCCGTTCTACAAGTGAGCTCCAGGACATCCAGAGC
TGTTACACAGAGAAACTCTATTTAGAAACCCCATTCACCTCCCCCCAAAA
AAGGGAATAGGGACAATCAAGAAGTTATTCTACCTTTCCTATACAAACTA
GCAGAATAATCAGTTGATTAAAGGAACAATTCTCTAAAAATTATTCCAAC
TAATATATGGAGAAAAATAACAGAATTAGAATATCATATAACTACCACCA
ACTCAAAGAAGGGAATATGATCTTATAGTATTAAGAGATTTTTGGGGGGA
GACCGGAGAGATGGCTCAGTGGTTAAGAGCACTGACTGTTCTTCCAGAGG
TCCTGAAGTCAATTCCAAGTAACCACATGGTGGCTCACAACCATCTGTAA
TAGGATCTGATGACCTCTTCTGGTATGTCTGAAGACAGCTACAGTGTACT
CACATACATACATACTTACATACATACCTACATACATACATACTTACTTA
CATACATACATACATCTTTACCAAGGACACAAAAGAAAGAAATGTCCCGC
AAAGGTATAGCTGGGTCCTCCGGAAGAACCATTTTCCCTTCTCTAAAGAA
TCCTTCTAGTGATTCCTTGAGTGGTTTTACCACTTTTGTAATCCCCCTCA
TATTGGCAGGTACGTGTCTTCTTCCCCCCTCTTCTTTTACAATGCCTTGG
CCGG
NCCACGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTTACTGCATTTACATGAA
TATGAATGTGCAGAATGTAAGATAGCAGAGGCAACACCAGGAACCTTTAA
TGGGATTGAATTTACCTAGAGGGGATTTACTTGCCACCCACTAGGCAAGT
AGCGCTGCATCCAGAGGCGATCTGAGGTGTCTGAGATGGTGGTGCTCACC
CTGTGGGATGAGAGCAGGTCTAGATGTGAGATCTACCAGAAGGCTGGAAA
GGTAACTGGGGTTGTGGCTGGGTCTGTTTTAGAGATCTGATTGCCTCAGT
TCTCAAAAGGAGCTTTTGATGGTCACTGGGACCACTGGGATATTTAACAA
GCCTGGTTGATGGGGTAAGATTAGGAGCAGGACTTCCAGAGAAACTCTCC
TGCCCTCATGCTGATGGGCCTTGGGCAAGTCTTTTAGTTCCCTGTGCCTC
AGCTTCCTACACCTGCAAAACGCTACCGGCCTTACCCTCTACCTCCCGCC
TTGCTTACGCCCCCCCTTTCTCCTCTCCTCCCCTTCTTCTCGTTCTCCTG
CTCCTTCTTCCTGCTTTGCCCTCTCCCCCCCTATTTCGGCCTTTTCCTCC
CCACCCACTCCTCTTTCTTTCTCTCTCTTCCCTCCTCCTCTCCCCCCTCT
CTCTCCCCTTCCCTCTCCCTTCCACCCTTTCTTTTCCCCTTCCTTCCTTC
CCCTTTCCCCTCTTCTTTTTTTCTCCCATCTCATCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no410_h12.g1 MSMg01no410_h12.g1 CHROMAT_FILE:
MSMg01no410_h12.g1 PHD_FILE: MSMg01no410_h12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:27:13 2005
         (244 letters)



>mm_chr9_66088858_66089501
          Length = 644

 Score =  439 bits (227), Expect = e-128
 Identities = 239/243 (98%), Gaps = 2/243 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttttactgcatttacatgaatatgaatgtgcagaatgtaagatagcagaggcaacaccag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttttactgcatttacatgaatatgaatgtgcagaatgtaagatagcagaggcaacaccag 260

                                                                       
Query: 61  gaacctttaatgggattgaatttacctagaggg-gatttacttgccacccactaggcaag 119
           ||||||||||||||||||||||||||||| ||| ||||||||||||||||||||| ||||
Sbjct: 261 gaacctttaatgggattgaatttacctag-gggagatttacttgccacccactagacaag 319

                                                                       
Query: 120 tagcgctgcatccagaggcgatctgaggtgtctgagatggtggtgctcaccctgtgggat 179
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 tagcactgcatccagaggcgatctgaggtgtctgagatggtggtgctcaccctgtgggat 379

                                                                       
Query: 180 gagagcaggtctagatgtgagatctaccagaaggctggaaaggtaactggggttgtggct 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 gagagcaggtctagatgtgagatctaccagaaggctggaaaggtaactggggttgtggct 439

              
Query: 240 ggg 242
           |||
Sbjct: 440 ggg 442


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space:   149225
Effective search space used:   149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)