BAC Information

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BAC

Clone NameMSMg01-410I06
Chromosome9 (Build37)
Map Location 102,662,110 - 102,662,395
singlet/doubletsinglet
Overlap genenone
Upstream geneEphb1, 9630041A04Rik, Ky, LOC664843, Cep63, Anapc13, Amotl2, EG434510
Downstream geneRyk, Slco2a1, Rab6b, Srprb, Trf, 1300017J02Rik, Topbp1, Cdv3, Bfsp2, Tmem108, 4932413F04Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-410I06.T7 (MSMg01no410_i06.b1)MSMg01-410I06.TJ (MSMg01no410_i06.g1)
ACCAG507746AG507747
length797773
length of high quality
(start - end)
249 (77 - 325)286 (79 - 364)
definitionCHROMAT_FILE: MSMg01no410_i06.b1 PHD_FILE: MSMg01no410_i06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:27:16 2005CHROMAT_FILE: MSMg01no410_i06.g1 PHD_FILE: MSMg01no410_i06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:27:17 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTGCCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGGATC
CGCGGAATTCATAAACGTTTCGCTGTCATGCATCCTGGTACACTCCTACA
ATTCCAGCATGTGGGAAGAATGAAGCAGGAGGCTAGCCTGAATTTCAGAA
CAAGTGTCTGTCTAAAACAAAGAAACCAACAAACAAAAGCAAAAACAGAA
AAGAAGGCAAAGAAAGAAAGGCAGGTAGGCAGGCTGAGGAGGTGCTCAGC
TCCTAACATGCTTGCTACAAGAGAGAGCCAGAGTTTAGATCCCAGCACCC
ACAAAAAAGCTGGGTGCAATGGCATATTTTTGTAATTCCAGCCCTGAGGA
GATGGGGACAGGAGGTTCCCTGGAGCTTCCTGGACGGCCACCCAGCTGAG
CCTCATCATTGAATTCTAGGGCAAGCAATAGATCCTGTCTCAAAAAATTT
CACACACACACACACACACTCACTTACACCCCCATTCTCTCCACATACAC
TATCTTACTATCCCTTTTCCTCCTACCCCTTTCCTCTCCTCCCCCCTTAC
TGCTCTCAGTTATCTGCCTTCCCTAACTTATATTTTCCCGACCCCCCCTT
TTCTTTTCCTAACCGACATTAATGTCCCTCATGCCCTTACCTCTCCTTTC
TATACACTCCATTCATCATACCCCCTGGCTTGTGTCTTAATACTCACATT
CCTGTTTCTTCTCGAATTTTCCCCCTTTTGCCGCATTCTCTCGGCCCTTC
TCTACCCCCCCTTTTCCCTCTCCTTTCTTTCGCCCCCCTCTCTATTT
NNCCTCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXAATAAAGGCCAGAGATTCCACA
AGCCATCTGACTCAACTTGATTTCCTCCTTCCTCCTGTTTCTCCACCCTA
TGACCCTGAAAAGGCCCAGAACCCAAGGCTCTGCAGCCAGGCCCTAGCCT
GTCATTCCAGCTGCTGGTCAGGAGTCTTTAATCTTATTGGTCACCTGGTA
CACTCGACAGAGTGGACAGCTCTATACTGCAGGAGAATGGTGGCAGGAGG
TGGGGGATAGGGAGGATAGTCTTTTTTCTATTACAGATCAGGCATCCTGA
GTTCAAATCCTGGCTCCCCAATTAACAATATGGGGAATGAGTTATCCTGC
GTGAACCAGCTTCCTCCCGTGTAAGCGTTGCGTGTCCATGGTTTCCTCCC
CTTACGGACGTTCGCCGGATTTGCCGTCATCCTGCACTTATTCCCTTATT
CCCGTCCCTAGCGATCTCCTCTTCCTTCTACCTTCTCCCTTCCCCCTCCC
CCCCTTTCCATATTTACCCGTTTTTCCCTTATCGCCCCAATCGCCTTCCC
TCACTTTCTCATCCCATATCCTTCCCTTCTCCTTTCCTTCCTTTCCCTTT
TTCCCCCGTTTCCACCTCCCTTTTTTTTCGCCTCCACCCCTTTTCCCCCC
CCATTTCCCTCCCCTTTTCCCCCCTTTTTCCCTCCTTTTTTCTCCTTCCC
CTTCCTATTTTTTCCCTTTTCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no410_i06.g1 MSMg01no410_i06.g1 CHROMAT_FILE:
MSMg01no410_i06.g1 PHD_FILE: MSMg01no410_i06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:27:17 2005
         (286 letters)



>mm_chr9_102661910_102662595
          Length = 686

 Score =  495 bits (256), Expect = e-144
 Identities = 278/292 (95%), Gaps = 12/292 (4%)
 Strand = Plus / Plus

                                                                       
Query: 1   aataaaggccagagattccacaagccatctgactcaacttgatttcctccttcctcctgt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aataaaggccagagattccacaagccatctgactcaacttgatttcctccttcctcctgt 260

                                                                       
Query: 61  ttctccaccctatgaccctgaaaaggcccagaacccaaggctctgcagccaggccctagc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttctccaccctatgaccctgaaaaggcccagaacccaaggctctgcagccaggccctagc 320

                                                                       
Query: 121 ctgtcattccagctgctggtcaggagtctttaatcttattggtcacctggtacactcgac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctgtcattccagctgctggtcaggagtctttaatcttattggtcacctggtacactcgac 380

                                                                       
Query: 181 agagtggacagctctatactgcaggagaatggtggcaggaggtgggggatagggaggata 240
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 381 agagtggacagctctatactgcaggagaatggtggcaggaggtgggggatggggaggata 440

                                                               
Query: 241 gtctttttt------ctattacagatcaggcatcctgagttcaaatcctggc 286
           |||            ||| |||||||||||||||||||||||||||||||||
Sbjct: 441 gtc------aacagcctagtacagatcaggcatcctgagttcaaatcctggc 486


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 686
Length adjustment: 9
Effective length of query: 277
Effective length of database: 677
Effective search space:   187529
Effective search space used:   187529
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)