Query= MSMg01no410_l21.b1 MSMg01no410_l21.b1 CHROMAT_FILE:
MSMg01no410_l21.b1 PHD_FILE: MSMg01no410_l21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:27:34 2005
(553 letters)
>mm_chr9_79487991_79488944
Length = 954
Score = 978 bits (506), Expect = 0.0
Identities = 543/560 (96%), Gaps = 11/560 (1%)
Strand = Plus / Plus
Query: 1 gcctcagactcacagagatccacctgcctctgcctcccaagtactggaattaaaggtgtg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 199 gcctcagactcacagagatccacctgcctctgcctcccaagtactggaattaaaggtgtg 258
Query: 61 cgccactatgctggttttcatcagtaatttccaaggaaaagaaattatacagtccctcaa 120
||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 tgccaccatgctggtttccatcagtaatttccaaggaaaagaaattatacagtccctcaa 318
Query: 121 aattatgaatgtcatttacagaaaaaaaaataagaaaaatttctaatatactagctgctg 180
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 319 aattatgaatgtcatttacagaaaaaaa--taagaaaaatttctaatatactagctgctg 376
Query: 181 aatcctattaaaacttgtcaaaaatgttgggtaaacaaaatctaaatgacaaattacaga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 aatcctattaaaacttgtcaaaaatgttgggtaaacaaaatctaaatgacaaattacaga 436
Query: 241 ttcagtatttctattatattatatcgatgaatataagtggtatatatgttaacattcaat 300
|||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 437 ttcagtatttctattagattatatcgatgaatgtaagtggtatatatgttaacattcaat 496
Query: 301 gtcaaaaaaaaaa------ccctgcaataacctgcctctgcctcctaagtgctgggatta 354
||||||||||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct: 497 gtcaaaaaaaaaaaaataac--tgcaataacctgcctctgcctcctaagtgctgggatta 554
Query: 355 aaggcatgtggcaccatgactctagtttatagtaaagcaacaagaagctaaaaaaaa-ct 413
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 555 aaggcatgtggcaccatgactctagtttatagtaaagcaacaagaagctaaaaaaaaact 614
Query: 414 gcaatagaattttacacaggtaactatgagttaaatgatattgtataaggttagtatttt 473
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 615 gcaatagaattttacacaggtaactatgagttaaatgatattgtataaggttagtatttt 674
Query: 474 aaaaatcaaaatataatattctgtatcaagtaaaaatcccttcctccaggaggaggaaga 533
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 675 aaaaatcaaaatataatattctgtatcaagtaaaaatcccttcctccaggaggaggaaga 734
Query: 534 atgtgatgaggaactgtggg 553
||| ||||||||||||||||
Sbjct: 735 atgggatgaggaactgtggg 754
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 553
Length of database: 954
Length adjustment: 10
Effective length of query: 543
Effective length of database: 944
Effective search space: 512592
Effective search space used: 512592
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no410_l21.g1 MSMg01no410_l21.g1 CHROMAT_FILE:
MSMg01no410_l21.g1 PHD_FILE: MSMg01no410_l21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:27:34 2005
(483 letters)
>mm_chr9_79708343_79709225
Length = 883
Score = 859 bits (444), Expect = 0.0
Identities = 474/484 (97%), Gaps = 2/484 (0%)
Strand = Plus / Minus
Query: 1 agtacttacgttcaactagttagccctcctgttaaaacatgcatcaatgactaagtttgt 60
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 agtactttcgttcaactagttagccctcctgttaaaacatgcatcaatgactaagtttgt 624
Query: 61 agttttgaactcatggcttacggtggtgctggagaaaactgttgtactgttatggactga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 agttttgaactcatggcttacggtggtgctggagaaaactgttgtactgttatggactga 564
Query: 121 aatctgtgcccaactagctgttaaagtcacactggtttatcttttagccttctggtaaag 180
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 aatctgtgcccaaccagctgttaaagtcacactggtttatcttttagccttctggtaaag 504
Query: 181 cagctccaagcctagaagggaacacacatacacagcaaatgtcagctgtatcacag-agt 239
|||||||||||||||||||||||||| |||| |||||||||||||||||||||||| | |
Sbjct: 503 cagctccaagcctagaagggaacacatatactcagcaaatgtcagctgtatcacagta-t 445
Query: 240 gtcaacagaaaaagcccccagaggtgcaagcattgtatgatgggaacccaagacgatgcc 299
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 gtcaacagaaaaagccctcagaggtgcaagcattgtatgatgggaacccaagacgatgcc 385
Query: 300 atctacatctgtggttttcttgagagtgtcaataaaatgttgaggaaaaccaccaaaaga 359
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 384 atctacatctgtggttttcttgagagtgtcaataaaatgttgaggaaaatcaccaaaaga 325
Query: 360 ctaccaagttgccttgtctggtgactgtctgggtgttcaaagcgtaaaatttgatgggaa 419
|||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||
Sbjct: 324 ctaccaagttgccttgtctggtgactgtctgggtgttcaaagggtagaatttgatgggaa 265
Query: 420 gtacttagtttaaaagctcagcacagcacagtgtgagttctagccgtgtgcttctgtatg 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 gtacttagtttaaaagctcagcacagcacagtgtgagttctagccgtgtgcttctgtatg 205
Query: 480 aagc 483
||||
Sbjct: 204 aagc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 483
Length of database: 883
Length adjustment: 10
Effective length of query: 473
Effective length of database: 873
Effective search space: 412929
Effective search space used: 412929
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
