Query= MSMg01no411_a06.b1 MSMg01no411_a06.b1 CHROMAT_FILE:
MSMg01no411_a06.b1 PHD_FILE: MSMg01no411_a06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:27:56 2005
(548 letters)
>mm_chr9_111812854_111813801
Length = 948
Score = 1044 bits (540), Expect = 0.0
Identities = 543/544 (99%)
Strand = Plus / Plus
Query: 5 gaattcttgcatttctccattatctggttataagtttccatatccctgtgacacacccat 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcttgcatttctccattatctggttataagtttccatatccctgtgacacacccat 264
Query: 65 gtgttcattttatactatgtcattcttgcattagtgtctgtaacatactgattataacag 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gtgttcattttatactatgtcattcttgcattagtgtctgtaacatactgattataacag 324
Query: 125 tgatatttcctatactgtaatttcaaattctgtgtaagacctaaacctggtaataatgtt 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tgatatttcctatactgtaatttcaaattctgtgtaagacctaaacctggtaataatgtt 384
Query: 185 tggtttttctctttaaatgtcaccatcttttgaattttaaatatttttgttgttttttaa 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tggtttttctctttaaatgtcaccatcttttgaattttaaatatttttgttgttttttaa 444
Query: 245 ttaaaatttaattttttgagaatttcatccatgagtatattgtatttacatcactttcac 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ttaaaatttaattttttgagaatttcatccatgagtatattgtatttacatcactttcac 504
Query: 305 ctctcttttcccttccaactcttcccatgtgatctcattccctctcaaacttatgacctc 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ctctcttttcccttccaactcttcccatgtgatctcattccctctcaaacttatgacctc 564
Query: 365 ttcaataataataataataataaatttataatagctaaatctatctatatacctacctgc 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ttcaataataataataataataaatttataatagctaaatctatctatatacctacctgc 624
Query: 425 catttatctatataatccacagagtgcagttagtgttgcctgtatgtacacatgcttatg 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 catttatctatataatccacagagtgcagttagtgttgcctgtatgtacacatgcttatg 684
Query: 485 gttgaccacttaaaattaggaaatttcatgaaaactccagatatcatgagtgatggggag 544
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 685 gttgaccacttaaaattaggaaatttcatgaaaactccagatatcatgagtgacggggag 744
Query: 545 cctg 548
||||
Sbjct: 745 cctg 748
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 548
Length of database: 948
Length adjustment: 10
Effective length of query: 538
Effective length of database: 938
Effective search space: 504644
Effective search space used: 504644
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no411_a06.g1 MSMg01no411_a06.g1 CHROMAT_FILE:
MSMg01no411_a06.g1 PHD_FILE: MSMg01no411_a06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:27:56 2005
(245 letters)
>mm_chr9_111951812_111952458
Length = 647
Score = 447 bits (231), Expect = e-130
Identities = 242/247 (97%), Gaps = 4/247 (1%)
Strand = Plus / Minus
Query: 1 tccaaaagtgtatccccatatccatgagaaattgtcattggcag--aaaaaaaatgaaat 58
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 342 tccaaaagtgtatccccatatccatgagaaattgtcattggcagaaaaaaaaaatgaaat 283
Query: 59 tttaggaacaggataaggaaattgttttattaaatataaaaaacattttctaagatttta 118
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 tttaggaacaggataaggaaattgttttattaaatataaaaaacattttctaagatttta 223
Query: 119 tggtaagtatagagtgtatattattggtagagcatttacccagcatgtgtaaaaccctag 178
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 222 tggtaagtatagagtgtatatttttggtagagcatttacccagcatgtgtaaaaccctag 163
Query: 179 tttgattcttataaacacacacacacacacacacacacacacacacacacacacacacca 238
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162 tttgattcttataa--acacacacacacacacacacacacacacacacacacacacacca 105
Query: 239 atggagt 245
|||||||
Sbjct: 104 atggagt 98
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 17
Number of successful extensions: 17
Number of sequences better than 10.0: 1
Number of HSP's gapped: 12
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 647
Length adjustment: 9
Effective length of query: 236
Effective length of database: 638
Effective search space: 150568
Effective search space used: 150568
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
