Query= MSMg01no411_a07.b1 MSMg01no411_a07.b1 CHROMAT_FILE:
MSMg01no411_a07.b1 PHD_FILE: MSMg01no411_a07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:27:56 2005
(690 letters)
>mm_chr9_111812854_111813943
Length = 1090
Score = 1270 bits (657), Expect = 0.0
Identities = 679/688 (98%), Gaps = 4/688 (0%)
Strand = Plus / Plus
Query: 5 gaattcttg--ttttcctccattatctggntataagtttccatatccctgtgacacaccc 62
||||||||| ||| ||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 205 gaattcttgcattt--ctccattatctggttataagtttccatatccctgtgacacaccc 262
Query: 63 atgtgttcattttatactatgtcattcttgcattagtgtctgtaacatactgattataac 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 atgtgttcattttatactatgtcattcttgcattagtgtctgtaacatactgattataac 322
Query: 123 agtgatatttcctatactgtaatttcaaattctgtgtaagacctaaacctggtaataatg 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 agtgatatttcctatactgtaatttcaaattctgtgtaagacctaaacctggtaataatg 382
Query: 183 tttggtttttctctttaaatgtcaccatcttttgaattttaaatatttttgttgtttttt 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 tttggtttttctctttaaatgtcaccatcttttgaattttaaatatttttgttgtttttt 442
Query: 243 aattaaaatttaattttttgagaattttatccatgagtatattgtatttacatcactttc 302
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 443 aattaaaatttaattttttgagaatttcatccatgagtatattgtatttacatcactttc 502
Query: 303 acctctcttttcccttccaactcttcccatgtgatctcattccctctcaaacttatgacc 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 acctctcttttcccttccaactcttcccatgtgatctcattccctctcaaacttatgacc 562
Query: 363 tcttcaataataataataataataaatttataatagctaaatctatctatatacctacct 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 tcttcaataataataataataataaatttataatagctaaatctatctatatacctacct 622
Query: 423 gccatttatctatataatccacagagtgcagttagtgttgcctgtatgtacacatgctta 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 gccatttatctatataatccacagagtgcagttagtgttgcctgtatgtacacatgctta 682
Query: 483 tggttgaccacttaaaattaggaaatttcatgaaaactccagatatcatgagtgatgggg 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 683 tggttgaccacttaaaattaggaaatttcatgaaaactccagatatcatgagtgacgggg 742
Query: 543 agcctgtcagaaggttggctggttggaggttttctatagctgtttctacaaggtcctgtg 602
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 agcctgtcagaaggttggctggttggaggttttctatagctgtttctacaaggtcctgtg 802
Query: 603 gccttctctataatccagccctttgcttcccatgttatctttctgtgtttttcctaatga 662
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 803 gccttctctatgatccagccctttgcttcccatgttatctttctgtgtttttcctaatga 862
Query: 663 ctccatgaacaaactctgcattcttcag 690
|||| |||||||||||||||||||||||
Sbjct: 863 ctccgtgaacaaactctgcattcttcag 890
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 39
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 690
Length of database: 1090
Length adjustment: 10
Effective length of query: 680
Effective length of database: 1080
Effective search space: 734400
Effective search space used: 734400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no411_a07.g1 MSMg01no411_a07.g1 CHROMAT_FILE:
MSMg01no411_a07.g1 PHD_FILE: MSMg01no411_a07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:27:56 2005
(549 letters)
>mm_chr9_111951169_111952117
Length = 949
Score = 934 bits (483), Expect = 0.0
Identities = 506/515 (98%), Gaps = 4/515 (0%)
Strand = Plus / Minus
Query: 37 attggcag--aaaaaaaatgaaattttaggaacaggataaggaaattgttttattaaata 94
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 949 attggcagaaaaaaaaaatgaaattttaggaacaggataaggaaattgttttattaaata 890
Query: 95 taaaaaacattttctaagattttatggtaagtatagagtgtatattattggtagagcatt 154
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 889 taaaaaacattttctaagattttatggtaagtatagagtgtatatttttggtagagcatt 830
Query: 155 tacccagcatgtgtaaaaccctagtttgattcttataaacacacacacacacacacacac 214
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 829 tacccagcatgtgtaaaaccctagtttgattcttataa--acacacacacacacacacac 772
Query: 215 acacacacacacacacacacaccaatggagtgtttgggcttcacagtgtcaacacattaa 274
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 771 acacacacacacacacacacaccaatggagtgggggggcttcacagtgtcaacacattaa 712
Query: 275 caaagtaatatattcaaacaaataaattacagcatctagaaacagaaacatgtgaaaatg 334
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 711 caaagtaatatattcaaacaaataaattacagcatctagaaacagaaacatgtgaaaatg 652
Query: 335 gttcagtacaaactataaaaccgtttacaaaaaggaaaaaacaatgctgaaacattctct 394
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 651 gttcagtacaaactataaaaccatttacaaaaaggaaaaaacaatgctgaaacattctct 592
Query: 395 atggaaaataaaactagacctctactcatctcacaaggtagccataaaaaaccttaaggt 454
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 591 atggaaaataaaactagacctctactcatctcacaaggtagccataaaaaaccttaaggt 532
Query: 455 aaagtaaatcacaaatgaaaaatatcaaaggaatgaaatgtcagaagagtcattagtggc 514
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 531 aaagtaaatcacaaatgaaaaatatcaaaggaatgaaatgtcagaagagtcattagtggc 472
Query: 515 atcctcatgacctcaaggtgtatactgaattttct 549
|||||||||||||||||||||||||||||||||||
Sbjct: 471 atcctcatgacctcaaggtgtatactgaattttct 437
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 78
Number of extensions: 17
Number of successful extensions: 17
Number of sequences better than 10.0: 1
Number of HSP's gapped: 12
Number of HSP's successfully gapped: 1
Length of query: 549
Length of database: 949
Length adjustment: 10
Effective length of query: 539
Effective length of database: 939
Effective search space: 506121
Effective search space used: 506121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
