BAC Information

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BAC

Clone NameMSMg01-411F19
Chromosome9 (Build37)
Map Location 34,551,656 - 34,719,915
singlet/doubletdoublet
Overlap geneKirrel3
Upstream genenone
Downstream geneSt3gal4, Dcps, Tirap, Foxred1, Srpr, C030004A17Rik, Rpusd4, EG434394, Cdon, Ddx25, Pus3, EG627480, LOC100042442, Svs7, Gm846, D730048I06Rik, 9230110F15Rik, LOC100041605, 9230113P08Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-411F19.T7 (MSMg01no411_f19.b1)MSMg01-411F19.TJ (MSMg01no411_f19.g1)
ACCAG508391AG508392
length759773
length of high quality
(start - end)		455 (69 - 523)450 (76 - 525)
definitionCHROMAT_FILE: MSMg01no411_f19.b1 PHD_FILE: MSMg01no411_f19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:28:23 2005CHROMAT_FILE: MSMg01no411_f19.g1 PHD_FILE: MSMg01no411_f19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:28:23 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(34,719,463 - 34,719,915)(34,551,656 - 34,552,105)
sequence
NATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCAGTCTGTGCTGTTGGGAAAGTAGGCAGATCTCTAAAGGCAGGC
TCTTGGAATATAATACCACCTTATTCTGTACGATTCTCCTGAGTGCCCTA
TAAGGCGCTGTCAATTCGAAAAAGTAGGAATGACTCAAGAGAAGGAGGGA
GAACATTTAAAGATAACAGAAGCAGATTTTAATGAGCTGTGTAAGTGGGT
AGAAGAGCAAAGGTAGGGAAGAAATAGAGAAGTAAGGGACACGTGGTGGT
GGTGGGGGGAGAGAACAGAGCTTTCGAAAAATACTGAATCACCACCACAC
GCTTTGGCACCAGCTGTTCTTCCCTGTGTAAATAGCACCATGAAGATCGA
GCTGAGCCTCCTACTCTCCTTCCTGAGCAGTTTTGTGTTCCTTGTCCAGG
TTCCTCTACACACAATTGTAGGCATACCCTCGCCTCCCTGTGTTACCCCT
GAGGGGTAGGGTGTGTGTGTGTGCTTCTCTCCCCATCTTCTTTCCCTCCC
TCCTCTTGTCTTTGTTTTTGCCTTCTTCCCCCTTCCTTCTCCTTCCTCTT
TTGGTGCCCTTCTTCTTTTCTTCTCCTTTTCCTCCCCTCCCCTTCCCTTT
CTTCTTTTTTTCTTCTCCTTTCCCCCTTTTTTCTTCCCCTCTTCCTCTTT
TCCCCTTTTCCCTTTTTCTTCCCCTTTTCTTTTCCTTTTTCTTCTCCCCT
CTCCTCTTC

CATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTGGTACCCAGGCCTTCAGATCCATG
TCCTTCTGCCTAGAGAAGTCTTTCCTGGGTCACTGGGCACAGCTGTGTCC
CTGTGCTGCTCTGTACCGGGAGGTCCTACTTTGGTCCTTTCATCCTTCCA
AAGATACGTACTGTCTCAGAAGCAATTGAGAAAATGGATCGAGCGAAGTC
AAATCTGATTTTCTTGAGGAAGAAAATCGAATTCACCACTTGGTGAGACA
GACAGAGATGAGAAGGAAGAGGCTCAGAAACACACAGCTCACCTAGGAAA
GGAGAGCCAGAGACTTAGAGGGTGAACTAGAGGGAGCTGAGCAGCCAGAA
ATGCCAGCCCACAGAACAGCTAAGAAGTCTTAGCTTTAGGCCTCTGGCTT
ATCTGGATGTCAAGCCTTCCGAATTTAGAACAAGCCCAGGGACTACCACA
CATGATCATACTGGTTTCAGTTTTAAGTATTTCTAAAGTCCTCTCAGGTT
GAGGGCACCATAAAGCCATTTTGGTACAGCAACACCTTCCCAGAAGTGAA
ATAAGGTGAGGAAAGAGCTAAAATTCTGAGAACCTGGTCCCGCATCTGGG
TGCCTCTCCGCTGGCGGGAAGTGAGCATCTCTTTCTACCTCCTCGAAACA
TTGCCCTATTTACTTTTCTTTTTCTCGGGAAATATCCAAAAGTTGGCCGT
GCTTTTTTCTTTCCACCTGGCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no411_f19.b1 MSMg01no411_f19.b1 CHROMAT_FILE:
MSMg01no411_f19.b1 PHD_FILE: MSMg01no411_f19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:28:23 2005
         (455 letters)



>mm_chr9_34719263_34720117
          Length = 855

 Score =  845 bits (437), Expect = 0.0
 Identities = 449/453 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttgggaaagtaggcagatctctaaaggcaggctcttggaatataataccaccttattctg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 653 ttgggaaagtaggcagatctctaaaggcaggctcttggaatataataccaccttattctg 594

                                                                       
Query: 61  tacgattctcctgagtgccctataaggcgctgtcaattcgaaaaagtaggaatgactcaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 593 tacgattctcctgagtgccctataaggcgctgtcaattcgaaaaagtaggaatgactcaa 534

                                                                       
Query: 121 gagaaggagggagaacatttaaagataacagaagcagattttaatgagctgtgtaagtgg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 533 gagaaggagggagaacatttaaagataacagaagcagattttaatgagctgtgtaagtgg 474

                                                                       
Query: 181 gtagaagagcaaaggtagggaagaaatagagaagtaagggacacgtggtggtggtggggg 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 473 gtagaagagcaaaggtagggaagaaatagagaagtaagggacacgtggtggtgggggggg 414

                                                                       
Query: 241 gagagaacagagctttcgaaaaatactgaatcaccaccacacgctttggcaccagctgtt 300
           |||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 gagagaacagagcaaacgaaaaatactgaatcaccaccacacgctttggcaccagctgtt 354

                                                                       
Query: 301 cttccctgtgtaaatagcaccatgaagatcgagctgagcctcctactctccttcctgagc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 353 cttccctgtgtaaatagcaccatgaagatcgagctgagcctcctactctccttcctgagc 294

                                                                       
Query: 361 agttttgtgttccttgtccaggttcctctacacacaattgtaggcataccctcgcctccc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 293 agttttgtgttccttgtccaggttcctctacacacaattgtaggcataccctcgcctccc 234

                                            
Query: 421 tgtgttacccctgaggggtagggtgtgtgtgtg 453
           |||||||||||||||||||||||||||||||||
Sbjct: 233 tgtgttacccctgaggggtagggtgtgtgtgtg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 455
Length of database: 855
Length adjustment: 10
Effective length of query: 445
Effective length of database: 845
Effective search space:   376025
Effective search space used:   376025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no411_f19.g1 MSMg01no411_f19.g1 CHROMAT_FILE:
MSMg01no411_f19.g1 PHD_FILE: MSMg01no411_f19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:28:23 2005
         (450 letters)



>mm_chr9_34551456_34552305
          Length = 850

 Score =  832 bits (430), Expect = 0.0
 Identities = 445/450 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tggtacccaggccttcagatccatgtccttctgcctagagaagtctttcctgggtcactg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tggtacccaggccttcagatccatgtccttctgcctagagaagtctttcctgggtcactg 260

                                                                       
Query: 61  ggcacagctgtgtccctgtgctgctctgtaccgggaggtcctactttggtcctttcatcc 120
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 261 ggcacagctgtgtccctgtgctgctctgtaccaggaggtcctactttggtcctttcatcc 320

                                                                       
Query: 121 ttccaaagatacgtactgtctcagaagcaattgagaaaatggatcgagcgaagtcaaatc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttccaaagatacgtactgtctcagaagcaattgagaaaatggatcgagcgaagtcaaatc 380

                                                                       
Query: 181 tgattttcttgaggaagaaaatcgaattcaccacttggtgagacagacagagatgagaag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgattttcttgaggaagaaaatcgaattcaccacttggtgagacagacagagatgagaag 440

                                                                       
Query: 241 gaagaggctcagaaacacacagctcacctaggaaaggagagccagagacttagagggtga 300
           ||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 441 gaaaaggctcagaaacacacagctcacctaggaaaggagagccagagacttaaagggtga 500

                                                                       
Query: 301 actagagggagctgagcagccagaaatgccagcccacagaacagctaagaagtcttagct 360
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 501 actagagggagctgagcagccagaaatgccagcccacagcacagctaagaagtcttagct 560

                                                                       
Query: 361 ttaggcctctggcttatctggatgtcaagccttccgaatttagaacaagcccagggacta 420
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttaggcctctggcttttctggatgtcaagccttccgaatttagaacaagcccagggacta 620

                                         
Query: 421 ccacacatgatcatactggtttcagtttta 450
           ||||||||||||||||||||||||||||||
Sbjct: 621 ccacacatgatcatactggtttcagtttta 650


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 450
Length of database: 850
Length adjustment: 10
Effective length of query: 440
Effective length of database: 840
Effective search space:   369600
Effective search space used:   369600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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