Query= MSMg01no411_f24.b1 MSMg01no411_f24.b1 CHROMAT_FILE:
MSMg01no411_f24.b1 PHD_FILE: MSMg01no411_f24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:28:24 2005
(492 letters)
>mm_chr9_105324383_105325274
Length = 892
Score = 930 bits (481), Expect = 0.0
Identities = 487/489 (99%), Gaps = 2/489 (0%)
Strand = Plus / Plus
Query: 5 gaattcaaaaatgta-ttctaaaaaaatttactgaagaattcttgcattcacttggctga 63
||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaaaaatgtactt-taaaaaaatttactgaagaattcttgcattcacttggctga 263
Query: 64 gtctaggaaaaggtgcaatcataaaataactgcatcctctgggatttttagataacttca 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 gtctaggaaaaggtgcaatcataaaataactgcatcctctgggatttttagataacttca 323
Query: 124 agaaagggagaaagactactctccttgcaaaaagctggcaaatgtgaagtctgcgtgcca 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 agaaagggagaaagactactctccttgcaaaaagctggcaaatgtgaagtctgcgtgcca 383
Query: 184 cacggagtaaagagcaggactcgggatcacaattcaacactgaccgcaagcagtgacgct 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 cacggagtaaagagcaggactcgggatcacaattcaacactgaccgcaagcagtgacgct 443
Query: 244 cgggtcaccgcgggctgtggaaggggagcagcgcaggcttccaccaccacattacgctgg 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 cgggtcaccgcgggctgtggaaggggagcagcgcaggcttccaccaccacattacgctgg 503
Query: 304 agtagctaaggccgtcacagctaaggctggatcatgaaatgagggcaacaagaacactta 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 agtagctaaggccgtcacagctaaggctggatcatgaaatgagggcaacaagaacactta 563
Query: 364 cttactcatgtaagaaagtaacatgaatgtgaactcaactcttaatgctacataatgttt 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 cttactcatgtaagaaagtaacatgaatgtgaactcaactcttaatgctacataatgttt 623
Query: 424 cttgtaacttccacttaacgacaataaagactctggcgcaagagtcactgctgcgccatc 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 cttgtaacttccacttaacgacaataaagactctggcgcaagagtcactgctgcgccatc 683
Query: 484 attttatgc 492
|||||||||
Sbjct: 684 attttatgc 692
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 492
Length of database: 892
Length adjustment: 10
Effective length of query: 482
Effective length of database: 882
Effective search space: 425124
Effective search space used: 425124
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no411_f24.g1 MSMg01no411_f24.g1 CHROMAT_FILE:
MSMg01no411_f24.g1 PHD_FILE: MSMg01no411_f24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:28:24 2005
(474 letters)
>mm_chr9_105487449_105488321
Length = 873
Score = 893 bits (462), Expect = 0.0
Identities = 471/476 (98%), Gaps = 5/476 (1%)
Strand = Plus / Minus
Query: 1 caggctaacatggcaaacacaagataggatacttgcagaaagaaaaccaaagaagctgat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 583 caggctaacatggcaaacacaagataggatacttgcagaaagaaaaccaaagaagctgat 524
Query: 61 gtgatggagagttggaaaagtgagcaaatatttccatgcctgtgactatctatcacaatc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 523 gtgatggagagttggaaaagtgagcaaatatttccatgcctgtgactatctatcacaatc 464
Query: 121 tccagtttcctgatgtagtctgttctttctatatatcaacacttgctgctgtaaatgctg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 463 tccagtttcctgatgtagtctgttctttctatatatcaacacttgctgctgtaaatgctg 404
Query: 181 gagaacagaaacagagtatggtaatccccgggctggttagagtagacaatccttgggagg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 gagaacagaaacagagtatggtaatccccgggctggttagagtagacaatccttgggagg 344
Query: 241 ttaggcacttc--tttacattagctctgaaaaaaaaaaaaaaaccaaaacccgtgcaaga 298
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 ttaggcacttcca---acattagctctgaaaaaaaaaaaaaaaccaaaacccgtgcaaga 287
Query: 299 tatatattccaaagctgcattaagcagggactgtggcttaggagagtggaaatagatgtg 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 286 tatatattccaaagctgcattaagcagggactgtggcttaggagagtggaaatagatgtg 227
Query: 359 gaacttcagatctgagttgggtaccactctgttggtagagggattacctagtatgcacga 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 226 gaacttcagatctgagttgggtaccactctgttggtagagggattacctagtatgcacga 167
Query: 419 agctctgaggactgcatgaaaccccaaaaccccatgaaaccaggcatggactggag 474
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 166 agctctgaggactgcatgaaaccccaaaaccccatgaaaccaggcatggactggag 111
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 474
Length of database: 873
Length adjustment: 10
Effective length of query: 464
Effective length of database: 863
Effective search space: 400432
Effective search space used: 400432
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
