BAC Information

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BAC

Clone NameMSMg01-411H03
Chromosome9 (Build37)
Map Location 20,274,059 - 20,274,443
singlet/doubletsinglet
Overlap geneZfp426
Upstream geneOlfr850, Olfr851, Olfr852-ps1, Olfr853, Olfr854, Olfr855, Zfp75, EG624341, LOC665751, Olfr857, Olfr858-ps1, Olfr58, Olfr859, Olfr860, GA_x5J8B7W6RL5-13004417-13003354, Olfr862, Olfr77, EG665823, Olfr863-ps1, Olfr864-ps1, Olfr865-ps1, Olfr866, Olfr867, Olfr868, Olfr869, Olfr870, Olfr871, Olfr872, Olfr39, Olfr873, Olfr18, Zfp560, 4921534A09Rik, EG624824, Zfp26
Downstream gene5730601F06Rik, 7030419G21Rik, LOC100041205, 2210010B09Rik, 5730577I03Rik, Fbxl12, Ubl5, Pin1, Olfm2, Col5a3, Rdh8, A230050P20Rik, Angptl6, Ppan, Eif3s4, Dnmt1, Edg5, Mrpl4, Icam1, Icam4, Icam5, Glp1, B230118G17Rik, Raver1, Tyk2, Cdc37, Pde4a, Keap1, Edg8, Atg4d, BC021438, Cdkn2d, Ap1m2, Slc44a2, Ilf3, Qtrt1, Dnm2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-411H03.T7 (MSMg01no411_h03.b1)MSMg01-411H03.TJ (MSMg01no411_h03.g1)
ACCAG508454AG508455
length780771
length of high quality
(start - end)
467 (49 - 515)447 (74 - 520)
definitionCHROMAT_FILE: MSMg01no411_h03.b1 PHD_FILE: MSMg01no411_h03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:28:29 2005CHROMAT_FILE: MSMg01no411_h03.g1 PHD_FILE: MSMg01no411_h03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:28:30 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCATTAACTATCCCAAACAACAGAAATCTCACATATAGATGGAA
GATGAACAATGTTCTACTCAATGATAACTTGGTCAAGGAAGAAATAAAGA
AAGAAATTAAAGACTTTTTAGAGTTGAATGAAAATGAAGCCACAACATAC
TCAAACTTATGGGACACAATGAATGCAGTGCTAAGCTATGCAGTGCATAG
ATCTGAGTGATTCAAAAAAAAAAACTGGAGAGATCCTACACACTAGCACC
TTAATAGCACACCTGAAAGCTCTAAAATTAAAGTAAGCAAATACACCCAA
GAGGAGTAGACAGCAGAAAACAATCACACCCAGGGCTGAAATCAACTAAG
TAGAAACAAAAAGAACTATACCAAGAATCAACAAAACCAGGAGCTAATCC
TTTGAGAAAATCAACAAGATAGATAAACCCTTAGCCACACTAACAAGAGT
GCACAGAGATAGTATCCAAATTAACAAAATCTACAATGAAAAGGGAGATA
TAACCACCGAAACTGAGATATTTCATAAAAAAACCTCAGATCCTACCGCA
TACTTAACCAATCTGCTTACATTGGGTGAAAAGGAACGTCTTCCTACCCA
TTCCTGAAACCCCTTCTATTTTCTCGATGTCATTAACCCCTCTTAATCGG
TCCCTTTCCCCCCTTAAGCAACGGGACCCTTTTCCTTAAACTTTTTCCAA
ACCCATTANCGGCCTCCCCATCAGGGGTTC
TTGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXACTAGAGAGAAGCCTAGTTGATGGAAG
CAATGTGAGGAAGCCCTTGTTTGTGCTCATGTACTTTGAAGACATGATGG
TACTCACACTGGGGAGAAACTATGAAAATTAGATACTTAGCTTAGAGCAG
TGCTGTGTTGCCATACTGAGCAACACAAATACTCCATGTCAAAAAAAATT
AAAGTGGATGCTGACAAGATAGCTCAGTGGGTAAAAGCACTTGATGGGAA
TGTCTGACAGCTTGAATCTGACCCACACTCACGTAAATCAGACAGATGTA
GTGGCATGCATCTGTATTCTCAGCATTCCTACAAGATCACCTGCAACCTT
GCAGGCCAGCTAGTTTATGTAGCATGGCAGAGAGGAAGACTGACTCAACA
AGGTAGAAGATTTAATGCCTTAAAGTTGACCTCTGATCTCCATGTGTCTG
CCCACCCTCCTACATATACCACAGTAATAAAAAAAATGTTTTTTTTCCCA
CAATAGCATTCTCCATACCCTTCTGACTACCCATTTTCCATCCCTGAATC
CTTCTTTGTCTAGATACAACTGGCTCCCTAAAAAGCTGTCCTCCGACTTC
CCCTTGCATGCTTGTGTCTTGTCCTCCTCCTCCCTCCATACCATTTCCCT
TATTCCTTTTCTTCTTCGCCCTCCCTTCACTCTCTTTTTTTTCTTTCCTC
CCTCTCTTGTCCTTTTCCCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no411_h03.g1 MSMg01no411_h03.g1 CHROMAT_FILE:
MSMg01no411_h03.g1 PHD_FILE: MSMg01no411_h03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:28:30 2005
         (447 letters)



>mm_chr9_20274059_20274904
          Length = 846

 Score =  716 bits (370), Expect = 0.0
 Identities = 382/386 (98%), Gaps = 1/386 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   actagagagaagcctagttgatggaagcaatgtgaggaagcccttgtttgtgctcatgta 60
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 actagagagaagcctaattgatggaagcaatgtgaggaagcccttgtttgtgctcatgta 326

                                                                       
Query: 61  ctttgaagacatgatggtactcacactggggagaaactatgaaaattagatacttagctt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ctttgaagacatgatggtactcacactggggagaaactatgaaaattagatacttagctt 266

                                                                       
Query: 121 agagcagtgctgtgttgccatactgagcaacacaaatactccatgtcaaaaaaaattaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 265 agagcagtgctgtgttgccatactgagcaacacaaatactccatgtc-aaaaaaattaaa 207

                                                                       
Query: 181 gtggatgctgacaagatagctcagtgggtaaaagcacttgatgggaatgtctgacagctt 240
           |||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 206 gtggatgctggcaagatagctcagtgggtaaaagcacttgatggaaatgtctgacagctt 147

                                                                       
Query: 241 gaatctgacccacactcacgtaaatcagacagatgtagtggcatgcatctgtattctcag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146 gaatctgacccacactcacgtaaatcagacagatgtagtggcatgcatctgtattctcag 87

                                                                       
Query: 301 cattcctacaagatcacctgcaaccttgcaggccagctagtttatgtagcatggcagaga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 86  cattcctacaagatcacctgcaaccttgcaggccagctagtttatgtagcatggcagaga 27

                                     
Query: 361 ggaagactgactcaacaaggtagaag 386
           ||||||||||||||||||||||||||
Sbjct: 26  ggaagactgactcaacaaggtagaag 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 447
Length of database: 846
Length adjustment: 10
Effective length of query: 437
Effective length of database: 836
Effective search space:   365332
Effective search space used:   365332
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)