Query= MSMg01no411_p13.b1 MSMg01no411_p13.b1 CHROMAT_FILE:
MSMg01no411_p13.b1 PHD_FILE: MSMg01no411_p13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:29:11 2005
(485 letters)
>mm_chr9_116213671_116214554
Length = 884
Score = 721 bits (373), Expect = 0.0
Identities = 453/501 (90%), Gaps = 38/501 (7%)
Strand = Plus / Minus
Query: 4 ggaattcatcacctttcagtaattaatgatgtagttaaatgatgtgtaatttctcctca- 62
|||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ggaactcatcaccattcagtaattaatgatgtagttaaatgatgtgtaatttctcctcat 662
Query: 63 tttctgcttgggttttagccattagagatggtttccctcttatttctgttgtccagttcc 122
|||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct: 661 tttctgcttgggttttagtcactagagatggtttccctcttatttctgttgtccagttcc 602
Query: 123 ctccagaaatggcaaaaaa--aaaac----c------------aaccc---cactttatt 161
||||||||||||||||||| ||||| | ||||| |||||||||
Sbjct: 601 ctccagaaatggcaaaaaaacaaaacaaaacaaaaaagaaaaaaacccacacactttatt 542
Query: 162 acgttaatttcctaataccatacaggaatttgtaagggccagtgtgaaagattattctag 221
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 541 acgttaatttcctaataccatacaggaatttgtaagggccagtgtgaaagactattctag 482
Query: 222 aactacccaagcactttggttcatctcctctacacaaagggagaggctaagttatctctg 281
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 aactacccaagcactttgattcatctcctctacacaaagggagaggctaagttatctctg 422
Query: 282 gttataaggaacatatataatgtgttactaggaacaaatggagaggaaggtagataagtt 341
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 gttataaggaacatatataatgtgttactaggaacaaatggagaggaaggtagataagtt 362
Query: 342 ctcagtgtaacaaggaatggccaccatccatccatccctccatccttccatccttccatc 401
||||| || |||||||||||||||||||||||||||| |||||||
Sbjct: 361 ctcagcgtgacaaggaatggccaccatccatccatcc----------------ttccatc 318
Query: 402 cttccatccttccatccatccattcaaacaagcctaaaatctcccactatgtattatgtg 461
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 317 cttccatccttccatccatccattcaaacaagcctaatatctcccactatgtattatgtg 258
Query: 462 ctgggttggtctctgttccag 482
||||||||||||||||||||
Sbjct: 257 ttgggttggtctctgttccag 237
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 485
Length of database: 884
Length adjustment: 10
Effective length of query: 475
Effective length of database: 874
Effective search space: 415150
Effective search space used: 415150
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no411_p13.g1 MSMg01no411_p13.g1 CHROMAT_FILE:
MSMg01no411_p13.g1 PHD_FILE: MSMg01no411_p13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:29:11 2005
(520 letters)
>mm_chr9_116050063_116050983
Length = 921
Score = 804 bits (416), Expect = 0.0
Identities = 459/478 (96%), Gaps = 11/478 (2%)
Strand = Plus / Plus
Query: 49 gggcagggccaggggcaggggcaggggcaggggcaggggcaggggcaggggcaggggcag 108
|||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 gggctggggcaggggcaggggcaggggcaggggcaggggcaggggcaggggcaggggcag 308
Query: 109 gggcaggggcaggggagcagctgcctgtgaatgtacaccaggcttatggagcgagttctc 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 gggcaggggcaggggagcagctgcctgtgaatgtacaccaggcttatggagcgagttctc 368
Query: 169 cagatagagtttggctgcgagggtttcatcaacttccattaatagcccatgagtcttagt 228
| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 369 cggatagagtttggctgcgagggtttcatcaacttccattaatagctcatgagtcttagt 428
Query: 229 gctcactacagctctttcttttat-----aaaagagcataggcacaaatttatattcacc 283
|||||||||||||||||| | |||||| ||||||||||||||||||||||||
Sbjct: 429 gctcactacagctctttc----aagaaaaaaaagaacataggcacaaatttatattcacc 484
Query: 284 cagcaagtaaattaagggattaagtaataattatctgtatttcttaaagattaatccaat 343
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 cagcaagtaaattaagggattaagtaataattatctgtatttcttaaagattaatccaat 544
Query: 344 agctacttcaggggaaactttggctgtccctgaagagtttaaaaatatatatttggcaag 403
||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 545 agctacttcgggggaaactt-ggctgtccctgaagagtttaaaaatatatatttggcaag 603
Query: 404 gatgtttttaaaaagccgtttatagataaaacaaactaggtgaatggaaaggcaatcatt 463
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 604 gatgtttttaaaaagccgtttatagataaaacaaactaggtgaatggaaaggcaatcatt 663
Query: 464 tttttt-gtagtcccaaacatcaaataactaaacgagtttcatctccctccttcctcc 520
|||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 664 tttttttgtagtcccaaacatcaaataactaaacgattttcatctccctccttcctcc 721
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 64
Number of extensions: 23
Number of successful extensions: 23
Number of sequences better than 10.0: 1
Number of HSP's gapped: 20
Number of HSP's successfully gapped: 1
Length of query: 520
Length of database: 921
Length adjustment: 10
Effective length of query: 510
Effective length of database: 911
Effective search space: 464610
Effective search space used: 464610
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
