BAC Information

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BAC

Clone NameMSMg01-413A02
Chromosome9 (Build37)
Map Location 96,192,158 - 96,192,467
singlet/doubletsinglet
Overlap geneTfdp2
Upstream geneChst2, LOC667088, 2610101N10Rik, LOC100040097, Paqr9, Pcolce2, Trpc1, AI427122, 1700065D16Rik, Xrn1, Gk5
Downstream gene1110029I05Rik, Atp1b3, BC043934, Rnf7, LOC667174, Rasa2, Zbtb38, EG622512, LOC100040230, LOC667216, Acpl2, LOC19034, LOC667226, Spsb4, LOC100040254, Slc25a36, EG622727, LOC384971
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-413A02.T7 (MSMg01no413_a02.b1)MSMg01-413A02.TJ (MSMg01no413_a02.g1)
ACCAG509640AG509641
length715739
length of high quality
(start - end)
555 (67 - 621)324 (71 - 394)
definitionCHROMAT_FILE: MSMg01no413_a02.b1 PHD_FILE: MSMg01no413_a02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:30:33 2005CHROMAT_FILE: MSMg01no413_a02.g1 PHD_FILE: MSMg01no413_a02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:30:33 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCAGAGAATGCCGCGGAAT
TCTGCCAATTTCTCAGTATATCTATCCCAATTATACATTCTGGAACTGGG
GAAATCACCACAGGATGTGTCCGGGGACCTACTGGCCCTACTGTGAGTCG
GACATCAGTCAAAACTCCATTAATCACCTGCCCTCCATAAGCCCCTACTT
TAACTGGAGGGCCACAATGTTTCTTGGGATCCCCTGGGATCAGTGTCAAC
TCAGAACCAGTATCCAGCAGACCCCGAAAAGTCTGATTATTTCCTTTTCC
CCAGTGTACAGTTACCCTTGTAAAAGGCCGTAGGTCCCTCTGGGGAAGAA
CTGGAGAAAGGGTAACAGCAAAACCTTTGAGTGTCTTATCAAGATCCTTC
CTCAGCGGAACCTGGCCACCCCTTCATTCAAGGGGTTCTGGATCTGCAAA
CTGTCTCAAGTCTGGAAATTGATTCACTGGCCGAGATTGCTGTTTACCAC
GATCTAATGTAGCCTTTCTTTCATTTGTTTGAGAATTTTTCTGCTTATAC
AGATCAAACAAATATGCAGTAGGCTTCCTATGTATTTCATTCCTGGAAAC
ACCATGATTGGTTAGCCAGTACCAAAGGTCCAACCGAGTCATGCCATTAT
AAATTTCACCTCTCCTGTGCTGACCATTACTGGGTATGTTATTATAAACA
TTTCTTTTGTCTACG
TGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXTTCAGGAATTCATGCATATACCCATAAATATTAAAAGTTT
CCTTAGATGTATTTACTGTTTTGCCTACACACACACACACACACACACAC
ACACACACACACACACACACACACACACACACACACACATTCTGTGCCGA
GAAGACGTCAGATTTCCTGGTGCTGGAGTTTAACAGATGGTTGTGAGCTA
CCAAGTAGATGCTAGAAACCAAACTGGGTCCTCTGTAAGAGCAGAGGACC
TACCTAACTATCCTAGACTCTCTCTCACACACACTCCTACTTAATGAAAT
AAGGGTTTGGGGGGACTGTTTTGTTGGTGGTTTTAAAATTTTAGGCTTTG
TGTGTGAGCTTAGGCGATCGTTTTATTTGTTTTCCCTTTGTCTACTTACC
CCCCTTTCTTCACTATTTTTTTTTTTGCTTTTCCCTTTTTTCCCCCTTAT
ATCTTCCGTTCGTTTTTTTTTTCCCTATTTCTTTCCTCTCTTTTCTTTCC
CTGCCTTATCTTCCCTTTTTTTCCCGTTCTTTCATTCTCCTTTTCGCCTT
TCGCCTCCCATCTTTCTAATTTATTCTTTCCATCTTTTTTGTTCTTATCT
TTCCGTCACCCTCTTCGCTTTTTTTCGTTCCTTTTTTTTGATCTTCCGTT
ATCCTCACTCCTATATATTCCCCTATTTATATCCCTCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no413_a02.g1 MSMg01no413_a02.g1 CHROMAT_FILE:
MSMg01no413_a02.g1 PHD_FILE: MSMg01no413_a02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:30:33 2005
         (324 letters)



>mm_chr9_96191944_96192667
          Length = 724

 Score =  561 bits (290), Expect = e-164
 Identities = 309/324 (95%), Gaps = 14/324 (4%)
 Strand = Plus / Plus

                                                                       
Query: 1   catgcatatacccataaatattaaaagtttccttagatgtatttactgttttgcctacac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
Sbjct: 215 catgcatatacccataaatattaaaagtttccttagatgtatttactgttttgcct---- 270

                                                                       
Query: 61  acacacacacacacacacacacacacacacacacacacacacacacacacacacacacat 120
                     ||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 ----------acacacacatacacacacacacacacacacacacacacacacacacacat 320

                                                                       
Query: 121 tctgtgccgagaagacgtcagatttcctggtgctggagtttaacagatggttgtgagcta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tctgtgccgagaagacgtcagatttcctggtgctggagtttaacagatggttgtgagcta 380

                                                                       
Query: 181 ccaagtagatgctagaaaccaaactgggtcctctgtaagagcagaggacctacctaacta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ccaagtagatgctagaaaccaaactgggtcctctgtaagagcagaggacctacctaacta 440

                                                                       
Query: 241 tcctagactctctctcacacacactcctacttaatgaaataagggtttggggggactgtt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tcctagactctctctcacacacactcctacttaatgaaataagggtttggggggactgtt 500

                                   
Query: 301 ttgttggtggttttaaaattttag 324
           ||||||||||||||||||||||||
Sbjct: 501 ttgttggtggttttaaaattttag 524


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 99
Number of extensions: 23
Number of successful extensions: 23
Number of sequences better than 10.0: 1
Number of HSP's gapped: 14
Number of HSP's successfully gapped: 1
Length of query: 324
Length of database: 724
Length adjustment: 9
Effective length of query: 315
Effective length of database: 715
Effective search space:   225225
Effective search space used:   225225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)