Query= MSMg01no413_g06.b1 MSMg01no413_g06.b1 CHROMAT_FILE:
MSMg01no413_g06.b1 PHD_FILE: MSMg01no413_g06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:31:03 2005
(277 letters)
>mm_chr9_54400922_54401598
Length = 677
Score = 482 bits (249), Expect = e-140
Identities = 269/281 (95%), Gaps = 9/281 (3%)
Strand = Plus / Plus
Query: 5 gaattcttccccatttcggagctggttactgagt---------gtatggatctacagagc 55
||||||||||||| | ||||||||||||||||| |||||||||||||||||
Sbjct: 196 gaattcttccccagatgggagctggttactgagtatggttactgtatggatctacagagc 255
Query: 56 tttgactggctttaagagcgttataagtgctggggtggtaaggaactggatcagaataga 115
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 tttgactggctttaagagcgttataagtgctggggtggtaaggaactggatcagaataga 315
Query: 116 aacaccgtgagcctcagagcacacgcagcccagaatcagcatgtacaaagctagggctaa 175
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 aacaccgtgagcctcagagcacacgcagcccagaatcagcatgtacaaagctagggctaa 375
Query: 176 gagggttgaaagcacacctcaatgaaggattcctatggaattcctactgatagagggctt 235
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 gagggttgaaagcacacctcaatgaaggattcctatggaattcctactgatagagggctt 435
Query: 236 gtcccaagaactctggaaggttagagtcagcactgaaaaat 276
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 gtcccaagaactctggaaggttagagtcagcactgaaaaat 476
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 277
Length of database: 677
Length adjustment: 9
Effective length of query: 268
Effective length of database: 668
Effective search space: 179024
Effective search space used: 179024
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no413_g06.g1 MSMg01no413_g06.g1 CHROMAT_FILE:
MSMg01no413_g06.g1 PHD_FILE: MSMg01no413_g06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:31:04 2005
(366 letters)
>mm_chr9_54593958_54594723
Length = 766
Score = 685 bits (354), Expect = 0.0
Identities = 363/366 (99%)
Strand = Plus / Minus
Query: 1 tcaccacatcataggaagccaactggagcctctgggaacagctcctctagatttaggacc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 tcaccacatcataggaagccaactggagcctctgggaacagctcctctagatttaggacc 507
Query: 61 tgcttggcaagtgtgtacctacctgatgctctgacgcaagacatcctcctgcacccggag 120
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 tgcttagcaagtgtgtacctacctgatgctctgacgcaagacatcctcctgcacccggag 447
Query: 121 gccagcttagctccaggctcaattctgcaagtctagaaaaggataagagcccctttttgc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 gccagcttagctccaggctcaattctgcaagtctagaaaaggataagagcccctttttgc 387
Query: 181 cctttcttgcccctacccccaggaacccctaccttgtctcagagtcactgttgtgtttag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 cctttcttgcccctacccccaggaacccctaccttgtctcagagtcactgttgtgtttag 327
Query: 241 ttgggtctgtgccaatagggtagggtgtctaaagaattcattgtagtcattcttgccttg 300
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 326 ttgggtctgtgccaatagggtagggtgtctaaagaattcattgtagccattcttgccttg 267
Query: 301 gcccggctaagtctggagctgacctcgggcacattcccagttttcttggtttccctaccc 360
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 gcctggctaagtctggagctgacctcgggcacattcccagttttcttggtttccctaccc 207
Query: 361 tagact 366
||||||
Sbjct: 206 tagact 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 366
Length of database: 766
Length adjustment: 9
Effective length of query: 357
Effective length of database: 757
Effective search space: 270249
Effective search space used: 270249
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
