BAC Information

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BAC

Clone NameMSMg01-413O23
Chromosome9 (Build37)
Map Location 77,868,287 - 77,868,743
singlet/doubletsinglet
Overlap genenone
Upstream geneTinag, LOC436082, 2310046A06Rik, 5730403I07Rik, Lrrc1, Klhl31, Gclc, LOC100042212, Elovl5
Downstream geneGcm1, LOC666353, Fbxo9, Ick, C920006O11Rik, Gsta4, LOC100041074, Gsta1, LOC666367, LOC100042295, LOC666373, LOC100042314, Omt2a, EG666383, Omt2b, Gsta2, Dppa5, 2410146L05Rik, LOC666408, LOC100042356, LOC666419, E330016A19Rik, Mto1, Eef1a1, Slc17a5, Cd109, LOC384957, EG666456
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-413O23.T7 (MSMg01no413_o23.b1)MSMg01-413O23.TJ (MSMg01no413_o23.g1)
ACCAG510349AG510350
length760756
length of high quality
(start - end)		459 (36 - 494)457 (65 - 521)
definitionCHROMAT_FILE: MSMg01no413_o23.b1 PHD_FILE: MSMg01no413_o23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:31:47 2005CHROMAT_FILE: MSMg01no413_o23.g1 PHD_FILE: MSMg01no413_o23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:31:47 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCATCCA
TGGAGAATAAAACGACTTCTACACGATGTCCTCTGACCTTTACAAGTACA
GTGTGGCAGAGGGTTGTGACCACCCTGACATATACTCACAAATAAATAAA
GTTTTTTTTGTTTTGTTTTGTTTTGTTTTTGGAAGTGGTGGCTCATGCCT
TTAATCCCAGCACTTGGCAGACAGAGGCAGGCGGATTTCTGAGTTCAAGG
CCAGCCTGGTCTACAGAGTAAGTTTCAGGACAGCCAGGGCTATACAGAGA
AACCCTGCCTTGAAAAACCAATAATAGTAATAATAATAAATGATAATAAT
GATAATAATAGTAAAAACTTTAAAAAAAACTTTAAAAGAGAAAGAGGCAA
GAGAGATGGCTGCGTGGTGGTTAAGACCAAATCTTTACTCTTCCAGACCA
CCTGGATTCAATTCCCCGAACCCACATTAGGTAGCTTGAAAGTTCCTGTA
ACTTCAGGTCTAGGGAATCCAACACCCTCTCCTGAATCCTATGGACACCN
CCGAAGAACCCCCGAGACACCCTCCNAGATAAATCTTTTTTTTTAATAAA
AGAAATAATGCTTAACGCTGCCCAAAGTCACCTTTGAAGGGCCAGGAACT
GGAGGGGAAGGGTGGAAACACATGGAATCCCCCTCCAAAATATTTCTTAA
AAAAAAAATTATTTTCTGTTCCGCATAAAAAGAAAACCTCCCCCCCCTAT
CCCCCTTTTT

GGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXTCTGGAACTGAAGTTTTAAACAGTTGTGAGCCACCA
TGTGACTTCTGGGAATCAAATCTGGGTCTTCTTGCAAGAGCAGTCAGTGC
TTTTAAATGCTGAACTATCTCTCCAACCTGGTATAGAACACTTTAAATAA
GGTTTCTTTCCAGTGGCTGGAACAGCAGAGGAGCTATGAGCTCCCAGAGA
AGGAAACATTAAGACACAGAAGTATTTTAAGCTTGTTTTTCAAGCCTGCA
CAAGAGCTACATTTGGTGAAGAGACTGAGACACCATTGAGGGAATCTAGC
TGTTGAAGCTGAAGTGTCCTTTCTCTGGGCCTGTCAGAGAGAAGGCCTGG
CCTGCAGGAGCTGCCACTGTCAACCTGCCCAAAAGATTAAATATTTAGGG
CACTTTGGAGAGAGAAGTTGCCTATGCTTTGAAAAGATAAGTCTAAATCT
AGCACCTTAGACCACCCCTACATGCTACCTTTCATGAGAGCCCACATTGA
TGCCCATGACCTGTGCTGCCACCAAGGGCCATGATCAAGTTCAGAGAGCT
ATGTGGATGCCCAGGGTCTGGGTTCCTGGAGAAGGCCTCTTTGAGGCGGT
AGCCCTGGTATCTCCAAAATCAAGGGGATGGCCTTGGTCTGTTCACCCCC
CAGGGGCCAGTTTTGGTCAGTGGCCGGGCCCCAACTTAAGGGGGTGGGGC
CGGTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no413_o23.g1 MSMg01no413_o23.g1 CHROMAT_FILE:
MSMg01no413_o23.g1 PHD_FILE: MSMg01no413_o23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:31:47 2005
         (457 letters)



>mm_chr9_77867969_77868825
          Length = 857

 Score =  837 bits (433), Expect = 0.0
 Identities = 451/457 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctggaactgaagttttaaacagttgtgagccaccatgtgacttctgggaatcaaatctg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 775 tctggaactgaagttttaaacagttgtgagccaccatgtgacttctgggaatcaaatctg 716

                                                                       
Query: 61  ggtcttcttgcaagagcagtcagtgcttttaaatgctgaactatctctccaacctggtat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 715 ggtcttcttgcaagagcagtcagtgcttttaaatgctgaactatctctccaacctggcat 656

                                                                       
Query: 121 agaacactttaaataaggtttctttccagtggctggaacagcagaggagctatgagctcc 180
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 655 agaacactttaaataaggtttctttcctgtggctggaacagcagaggagctatgagctcc 596

                                                                       
Query: 181 cagagaaggaaacattaagacacagaagtattttaagcttgtttttcaagcctgcacaag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 595 cagagaaggaaacattaagacacagaagtattttaagcttgtttttcaagcctgcacaag 536

                                                                       
Query: 241 agctacatttggtgaagagactgagacaccattgagggaatctagctgttgaagctgaag 300
           |||||| ||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 535 agctacgtttggggaggagactgagacaccattgagggaatctagctgttgaagctgaag 476

                                                                       
Query: 301 tgtcctttctctgggcctgtcagagagaaggcctggcctgcaggagctgccactgtcaac 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 475 tgtcctttctctgggcctgtcagagagaaggcctggcctgcaggagctgccactgtcaac 416

                                                                       
Query: 361 ctgcccaaaagattaaatatttagggcactttggagagagaagttgcctatgctttgaaa 420
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 415 ctacccaaaagattaaatatttagggcactttggagagagaagttgcctatgctttgaaa 356

                                                
Query: 421 agataagtctaaatctagcaccttagaccacccctac 457
           |||||||||||||||||||||||||||||||||||||
Sbjct: 355 agataagtctaaatctagcaccttagaccacccctac 319


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 457
Length of database: 857
Length adjustment: 10
Effective length of query: 447
Effective length of database: 847
Effective search space:   378609
Effective search space used:   378609
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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