BAC Information

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BAC

Clone NameMSMg01-414E22
Chromosome9 (Build37)
Map Location 105,260,235 - 105,260,482
singlet/doubletsinglet
Overlap geneNek11
Upstream geneCpne4, Mrpl3, Nudt16, 1700080E11Rik
Downstream geneAste1, Atp2c1, EG434434, LOC664981, Pik3r4, E330026B02Rik, EG665033, 1110001D15Rik, LOC669311, 6230410P16Rik, Wdr82, Ppm1m, Twf2, Tlr9, Alas1, Wdr51a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-414E22.T7 (MSMg01no414_e22.b1)MSMg01-414E22.TJ (MSMg01no414_e22.g1)
ACCAG510635AG510636
length814799
length of high quality
(start - end)
279 (49 - 327)249 (77 - 325)
definitionCHROMAT_FILE: MSMg01no414_e22.b1 PHD_FILE: MSMg01no414_e22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:32:18 2005CHROMAT_FILE: MSMg01no414_e22.g1 PHD_FILE: MSMg01no414_e22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:32:18 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NAAATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTTTATATATTCCGCGATACCAGCCCTCTGTCGGATGTGGGGT
GGATGAAGGCCTTTTCCCAATCTGTAGGGTGCTGTTTTGTCCTATTAATG
GTGTCCTTTCCCTTAGAGAAGCTTTTCAGTTTCATGAGGTCCCATTTATC
AATTGGTGATCTTAATGCCTGAGCCATTGATGTTGTGTTCAGGAAATTGT
CTCCTGAGCCAAGGCGTTCAAGGTTATTCCCCACTTTCTCTTCTATCAGA
TTTAGTGTATCTGGTTTTATGTTGAGGTTTTTTTTCTACTTGGACTCGAG
TTATGTGCAGAGTATTTTTTTCCCGCTCTACTTGCGTTCTGTCGACTGTA
GACGTCTAGGTAGTTCTTCCCCCCCCCCTCCAAAGGTATTCTTCTTTTTC
TTTTATGATTCACTGCTTCTTTTTTTGTTCTTCGTTTTTTTTTTTTCCCC
ATTCTTTATTCCTCTCTTTTTTTTCTTTATCTGTCTTTTCCTTTTCTCTT
ATTTTCTCTCTTCCTCTTTCCTCCCCCTTATTTCTTATTTTTTTTTTATT
CTTTTCCTTCCCTCTCGATCTTCGCTTTTATCCATTGTCCTTATTATTTT
TTCCGTCTTTCCCCCGTTCCCCCTCTCTCTTCTTATCTCCCTCCCTTTTC
TCTTTCCTACTATAATCATCCTATTTTATCAACTTATATCACCCTTTTCT
TCATCTTCCTTTATTTCTCTCTTTTTTTCTCTATTTTCTCTCGTCTTATT
TCTGCCCTTTCTTG
NNCCTATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXTTCAGATATACTATGGCAAGGAAGTACGAGCCTGGC
CTTTGAGCACCAGCACTTGTTAGAGCTGAGAAAGGTTTTGCTATGAAAGC
TTTTCTCAGTGCTTCCATACAAATAAGTGTAGGATCTCCATCAAGGACAC
CCACTGAGCATCAGCCCCATCTCTAGCTAGGACACATTTATTTTTATTAT
CTGTAAAGACTGAAAAAAGTCACTGGATTTATGAATAGTGGTTTTTTTAT
TAGGCAATACACATCCTCAAGCTCTTTTTTTTTAAAAGCTCTATTTACTC
TGTGCTCCTTAAGAGTTATTCTCATTGTGTAATATGTGTGGGAGGGCCAG
CCTTGTAAATGTATTTCTGACCACCCTCAGAAGTAGTGAAATTGCCTTCC
TAAAAATGTCTGTAGGTATTTTTTTCCTTGCCTCTATCTGTATTGATATT
TCTGCTTACCCTATTTTCTCCATCATTTACTGTTCTCATCCTAACTTCTA
TGATCACACTTATTCCCTCTTCGCTCCGTAACACATCTATTTTGCGCCTT
TATCACTGATACCTATCCCCCGTCCCAACCAACTCTTGTTTCTTTTCTTC
TCTTCGTTCGCGTATTCTGCCCTCGATCTCTTTATTTCAGTTCTTCAACA
TCCACAACCCACTCGAATCATTATTACTACTTTAACCTACTCACTGCTCT
CTTTACTTTTCCTTCTTCACTTATTCCTCTCTCTTTCCACTCCTACTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no414_e22.g1 MSMg01no414_e22.g1 CHROMAT_FILE:
MSMg01no414_e22.g1 PHD_FILE: MSMg01no414_e22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:32:18 2005
         (249 letters)



>mm_chr9_105260035_105260683
          Length = 649

 Score =  456 bits (236), Expect = e-133
 Identities = 245/248 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   atggcaaggaagtacgagcctggcctttgagcaccagcacttgttagagctgagaaaggt 60
           |||||||||||||||||||||||||||||||||||||||||||  |||| ||||||||||
Sbjct: 448 atggcaaggaagtacgagcctggcctttgagcaccagcacttgcaagagttgagaaaggt 389

                                                                       
Query: 61  tttgctatgaaagcttttctcagtgcttccatacaaataagtgtaggatctccatcaagg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 tttgctatgaaagcttttctcagtgcttccatacaaataagtgtaggatctccatcaagg 329

                                                                       
Query: 121 acacccactgagcatcagccccatctctagctaggacacatttatttttattatctgtaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 acacccactgagcatcagccccatctctagctaggacacatttatttttattatctgtaa 269

                                                                       
Query: 181 agactgaaaaaagtcactggatttatgaatagtggtttttttattaggcaatacacatcc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 agactgaaaaaagtcactggatttatgaatagtggtttttttattaggcaatacacatcc 209

                   
Query: 241 tcaagctc 248
           ||||||||
Sbjct: 208 tcaagctc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 649
Length adjustment: 9
Effective length of query: 240
Effective length of database: 640
Effective search space:   153600
Effective search space used:   153600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)