BAC Information

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BAC

Clone NameMSMg01-415M10
Chromosome9 (Build37)
Map Location 89,473,830 - 89,474,234
singlet/doubletsinglet
Overlap genenone
Upstream geneEG547109, LOC100039707, LOC100039721, Bcl2a1d, LOC100039674, EG666731, LOC100039741, Bcl2a1a, LOC100039689, EG666747, LOC100039714, 4930579C12Rik, Bcl2a1b, Mthfs
Downstream geneAF529169, Tmed3, B230218L05Rik, Rasgrf1, Ctsh, Morf4l1, LOC621414, Adamts7, Tbc1d2b, LOC100039777
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-415M10.T7 (MSMg01no415_m10.b1)MSMg01-415M10.TJ (MSMg01no415_m10.g1)
ACCAG511754AG511755
length744706
length of high quality
(start - end)
406 (66 - 471)235 (72 - 306)
definitionCHROMAT_FILE: MSMg01no415_m10.b1 PHD_FILE: MSMg01no415_m10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:34:15 2005CHROMAT_FILE: MSMg01no415_m10.g1 PHD_FILE: MSMg01no415_m10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:34:15 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AATTTGCGGGCGNTATAAGACTCACTTTTCGAAGAGGATCCGCGGAATTC
ACCNTTTTCTAGAGTTTAGGACAGTTTTATAGTGTAAACAGAGTTCACAG
TAATGTATCTCAAAATACAAGGGAGAATTTTGAATGTACTTGCCATACAG
AAATACAGTAAGCATTTAAAGTTGTAGGTATGCTAATCTCTATGCTGAAT
TATTATGTATTTTAAACATTCAAAATATACAAAGCCATCACAAAGAAACC
AAAGGAGGAAAAAAATCAGATGTGATATGTCTTAAAATCCTAGATACTGC
TCCTTCTAGTGTCTTCTTTAATAAAGAAGTCGGTATTTGCCCTATTCTTT
AAATCTCAAACACCAGAGACATCCTTGATGTTTTTAATTATTTCCCTTCC
CTCATGTGCAAGGGCAGTTGGCTGTATTTACAAATATATGTTCAGATCCA
CTGCCTCACTCAGGTCCTGTGTTATTGCAAGCATCTCCTGACTAGTGTTT
CTGTTCTTGCCCTTGCTTCTGCTACTCCAGAGTTGACACTTTAGACACTT
TTGATCTCGCTACCACTATGTGCATGGCGCCCGGACGATATTCATCTCTG
CTTATCTAACGCCTCATCCTCCTATTCACGGTATAATTGATTTCTTCTCC
TCCTCCCTAGGGCCCCACCTTAATTAATCCTACTTCTTTTCCTCCCCCCT
CTTTTTTTTCTCTAAATTCCTTACCACCCTTTACTTCCCTCCCC
ATGCAGTGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAAAGAA
GCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAATCA
AAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGTCTAAGATCAAA
AATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGATTACT
CCTCCATTGTTGATGGGATTGCAGGCTTGTACAACCACTCTGGAAATCCG
TCTGGCGTTCCTTTTTAAAATTGGACATAGTACTACCGGAGGATCCAGCA
ATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACTGGTAAGAAGGA
CACATGCTCCACCATGTTCATAGTAGCCTTATTTATAATAGCCAGAAGCT
GGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAATGTGG
CACATCCTACCCATGGAGTACTACTCAGCTATTCAAAAGAATGAATTTAT
GACATTCCTAGCTCAATGGATGGACCTGGAGGGTCTCATCCTGAGCGATG
TAATTCTTCCCCATGGTATTCTCCCCATACGTCCTCTTTGTTCACCGCAT
ATTAGCCCCATACCCTACGACCTCTCTATCTCCTATTCAATCCCCCTTTC
ATCTGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no415_m10.b1 MSMg01no415_m10.b1 CHROMAT_FILE:
MSMg01no415_m10.b1 PHD_FILE: MSMg01no415_m10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:34:15 2005
         (406 letters)



>mm_chr9_89473630_89474436
          Length = 807

 Score =  752 bits (389), Expect = 0.0
 Identities = 401/405 (99%), Gaps = 1/405 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttaggacagttttatagtgtaaacagagttcacagtaatgtatctcaaaatacaagggag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttaggacagttttatagtgtaaacagagttcacagtaatgtatctcaaaatacaagggag 260

                                                                       
Query: 61  aattttgaatgtacttgccatacagaaatacagtaagcatttaaagttgtaggtatgcta 120
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aattttgaatgtgcttgccatacagaaatacagtaagcatttaaagttgtaggtatgcta 320

                                                                       
Query: 121 atctctatgctgaattattatgtattttaaacattcaaaatatacaaagccatcacaaag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atctctatgctgaattattatgtattttaaacattcaaaatatacaaagccatcacaaag 380

                                                                       
Query: 181 aaaccaaaggaggaaaaaaa-tcagatgtgatatgtcttaaaatcctagatactgctcct 239
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaaccaaaggaggaaaaaaaatcagatgtgatatgtcttaaaatcctagatactgctcct 440

                                                                       
Query: 240 tctagtgtcttctttaataaagaagtcggtatttgccctattctttaaatctcaaacacc 299
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tctagtatcttctttaataaagaagtcggtatttgccctattctttaaatctcaaacacc 500

                                                                       
Query: 300 agagacatccttgatgtttttaattatttcccttccctcatgtgcaagggcagttggctg 359
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 501 agagacatccttgatgtttttaattatttcccttccctcatgtgtaagggcagttggctg 560

                                                        
Query: 360 tatttacaaatatatgttcagatccactgcctcactcaggtcctg 404
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tatttacaaatatatgttcagatccactgcctcactcaggtcctg 605


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 406
Length of database: 807
Length adjustment: 9
Effective length of query: 397
Effective length of database: 798
Effective search space:   316806
Effective search space used:   316806
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)