BAC Information

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BAC

Clone NameMSMg01-416C06
Chromosome9 (Build37)
Map Location 49,029,674 - 49,029,926
singlet/doubletsinglet
Overlap genenone
Upstream geneD930028F11Rik, 4432416J03Rik, EG640268, EG434401, LOC667933, Rexo2, Rbm7, EG434402, Nnmt, Zbtb16, Htr3a, Htr3b, Usp28, LOC100042785, Zw10, EG629400, Tmprss5
Downstream geneEG235327, Drd2, Ankk1, Ttc12, Ncam1, EG667975, LOC100042806
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-416C06.T7 (MSMg01no416_c06.b1)MSMg01-416C06.TJ (MSMg01no416_c06.g1)
ACCAG512029AG512030
length678721
length of high quality
(start - end)
254 (63 - 316)285 (74 - 358)
definitionCHROMAT_FILE: MSMg01no416_c06.b1 PHD_FILE: MSMg01no416_c06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:34:42 2005CHROMAT_FILE: MSMg01no416_c06.g1 PHD_FILE: MSMg01no416_c06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:34:42 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXTTTCAACAATCCGCGGAATTCAATCC
GCACTTTCCGTCCCCCAAGTCCCCTCCTACGCTGAGCCCCCTACACTTTG
CAGCCTACTTGAGAACCTCACACTTGGCAATTACTCCAGAGTGCTCCCTG
AGGATCCCCAGCAGTGGTTTTCCTGCTCTTTCCCCATCACCCTTTGGCTC
TCTCTCCCACCCATGTTACCAGGAGACCAGACAAACCACTCTTGGACCAG
GCCTTACTTCTCCTGCACCTTTGTTGCACAGGTTCTTCACGGCAATGTTG
GCCTGGGCCGACAGATTTTTGTGAGCTCTTGGCCTCTGTCCTGGGCTCTA
ACGCTCTCTGGATTCTCAGCCCTCTTTTCTTGGATTCTTTCCCAAGGCCC
CCCCTAAAAACCCCAAAAAAAAAAGTTTGGGAAAAAAAAAACTCTTGAAG
GACCCAAAAAAGAAAGGCCCCAAAAAATTCCCGGGAAGGGTTGGGATTGG
GGAAAAGGAAAAAAAGTTTTGTTCTTCTTTTTTCTCGCTATTTTACTTAA
TTTCGTATCCTTTTCCTCTTATCTGCTACCTTTTACTTTTCTCCTTTCTC
TCTCTTCACTCACAATCAAACTCCTCTATCTTACTTTTTTTTCTTTATTC
CTTATTTCTAATCATCTTCACCACCTCT
ACGATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXAGTCCCCAGGGCCCACGTGAGAGCACA
CACTTGGAATCCCAGCCCTGGAGAGGTAGAGATAGGAAGATCACTGGGGC
TCTGTGCTCAGCCAACACAGCCTGAGTACACATGAACACACTGATGCAGT
CACGCCCACATACATACATGTATACATACACAAGAGTGTGAGTGCACACA
CACACACACACACACACACACACACACACACACACACACATGCAGTGTCC
CGTGCTCTTCCTGGCCTGTACATCCCTGCCTGTGCCAAGGTACTGAACTT
AAAGATGAATCCCTAGCATTTGCAATCCTTACCCCAAAGCAAGATCCTGC
AGCAGTAAAAAAGAGCTTCAACCCCGTTTTGGTTTTCCTGGCAAAATACT
CCCTTCTAATGGGGCAAAAAACCTCTAAAAACTTAAATGGAAACTCTTGA
ACCCCCTTTCCACCCCTTCCCATATGTTCTTTTCCCGCCTCCGTTGGTTC
CTCGTGATTTGTACGTTCCTATCTCTTTGTTCATTTCTCGTTTCTTCAAA
AAATTTCGAGTAAGCCGATCTTTCGTAAATGTTTTTCCGCTGTTTAAAAA
GTGTCGCATACCTTGTTCTTCACTACGATTGTTTTGGTAAGTATATTTAT
CGTTTCGTTTTTTTTCTCTAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no416_c06.b1 MSMg01no416_c06.b1 CHROMAT_FILE:
MSMg01no416_c06.b1 PHD_FILE: MSMg01no416_c06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:34:42 2005
         (254 letters)



>mm_chr9_49029474_49030127
          Length = 654

 Score =  474 bits (245), Expect = e-138
 Identities = 251/253 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ccccaagtcccctcctacgctgagccccctacactttgcagcctacttgagaacctcaca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ccccaagtcccctcctacgctgagccccctacactttgcagcctacttgagaacctcaca 260

                                                                       
Query: 61  cttggcaattactccagagtgctccctgaggatccccagcagtggttttcctgctctttc 120
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 261 cttggcaattactccagagtgctccctgaggattcccagcagtggttttcctgctctttc 320

                                                                       
Query: 121 cccatcaccctttggctctctctcccacccatgttaccaggagaccagacaaaccactct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cccatcaccctttggctctctctcccacccatgttaccaggagaccagacaaaccactct 380

                                                                       
Query: 181 tggaccaggccttacttctcctgcacctttgttgcacaggttcttcacggcaatgttggc 240
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tggaccaggcctcacttctcctgcacctttgttgcacaggttcttcacggcaatgttggc 440

                        
Query: 241 ctgggccgacaga 253
           |||||||||||||
Sbjct: 441 ctgggccgacaga 453


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 254
Length of database: 654
Length adjustment: 9
Effective length of query: 245
Effective length of database: 645
Effective search space:   158025
Effective search space used:   158025
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)