ATTTCGAAGCGGCGCGGNAATCTCCTTTCCTGACATAAACAAAACTATAA
AACTACAATATCAAATACTGTGATAAGGGCTGGCAGGTTTGCTCAGTGGA
AAAGGGTGGTTTCCATTGAGCGGGGTAGCGTGAGTTTGATTCCTAGATCC
CACATGGTGGAAAGAGCCAAGTCTGACCTCCATACATGCCATGGCATGCA
CACTCCCTCCCATATAAATAAATGTTAAACAATTAAAATGTGATAAAAAT
GTAAGTGCAGGGGACTGGAGAGATGGCTCAGTGGTTTGGAGCTCNGTTTG
CTCTTACAGAGGACCTAGGTTCTAGTCTCATCATTCACATGGTGGCTTGA
GACCATCTATAACTACAGTTCTAGGGGATATGATACTTCTTTTGATCTTC
TGGGGCACTAGGAACACATGGTGCACACATATACACACATACAGTGGTGG
TTTGAATATGCTTGGCCCTGGGAGTGGCACTATTTGGAGTTATGGCCTTG
TTGGAAGAAGTGTGTTACTGTGGGGTTGGGCAATGAAAGCCTCCTCTTAA
CCACGTGGGAGTTAGACTTCTCCTGTCTGCCTTTGGATGAAGATGTAGAA
CTTTCATCTCGCCCCACGCCTGCCTGTATGTTGTCTTGCTCCCACCTTGA
TTATAATAGACTGAACCTCTGAGCCAGTAAGCCAGTTCCAATTAAATGT

CGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCAGGACAGCCAGGGCTATACAGAGATA
CCCTGTCTCGAAAAAACCATAAAAAAAAAAAAAAAAAAAAAGGCTCATGG
TTATGCTAACAACATGCTAGAGAGGCTGCAGCAGAGCTGAAGATCCTCTG
CATATAGTGTTCAGTTCTGGTTACTCTTCAGAGTATCCTGGGGCTCCTGG
AAAAACACTAGTAGACTGAGACCCCAGGAGAGAAAATGACCTATGCATGT
CCATCTATGCCTAGGCATTATGAAATATAACACGGATGGACTGGGTTACT
CCTGTGTCCCAGCTGAATGTTCTTTGATACAGTGAGCAGTTGTTGGATTT
GATCATAAGCAATAGAAAAACAAGGTGAGACCACCTGACTCTGCCAGTGG
CTTTGAAGTGTTTGCCTTGTAATAAAGTGAGTATGTTACTCACCCCAAAG
TAGTGACATTCTGGTTACGTGGTCAGTACCACTCCCACCCAAGCCAGGGC
ATGCCAGGTTATAGGTGGGAAAAGGTTGTCAGTTGAAGTTTTAATTATAC
TTAGTAGACAAAATAGAGCAGCTAAGCTCTAGTGATTAAGTGCTTGTTAA
ATCACTCTTCCATGATGATAGTTTAATTTCAGAGATTGGCACTTTAAAAA
AATTTAGAAAAGGGGATAAAAAGTAGTTGACTAGT

Query= MSMg01no416_d18.g1 MSMg01no416_d18.g1 CHROMAT_FILE:
MSMg01no416_d18.g1 PHD_FILE: MSMg01no416_d18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:34:49 2005
         (539 letters)



>mm_chr9_55313467_55314405
          Length = 939

 Score =  973 bits (503), Expect = 0.0
 Identities = 534/553 (96%), Gaps = 15/553 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   caggacagccagggctatacagagataccctgtctcgaaaaaacc--------------a 46
           ||||||||||||||||||||||||| ||||||||||| |||||||              |
Sbjct: 820 caggacagccagggctatacagagaaaccctgtctcg-aaaaaccaaaaaaaaaaaaaaa 762

                                                                       
Query: 47  taaaaaaaaaaaaaaaaaaaaaggctcatggttatgctaacaacatgctagagaggctgc 106
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 761 aaaaaaaaaaaaaaaaaaaaaaggctcatggttatgctaacaacatgctagagaggctgc 702

                                                                       
Query: 107 agcagagctgaagatcctctgcatatagtgttcagttctggttactcttcagagtatcct 166
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 701 agcagagctgaagatcctctgcatatagtgttcagttctggttactcttcagagtatcct 642

                                                                       
Query: 167 ggggctcctggaaaaacactagtagactgagaccccaggagagaaaatgacctatgcatg 226
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 641 ggggctcctggaaaaacactagtagactgagaccccaggagagaaaatgacctatgcatg 582

                                                                       
Query: 227 tccatctatgcctaggcattatgaaatataacacggatggactgggttactcctgtgtcc 286
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 581 tccatctatgcctaggcattatgaaatataacactgatggactgggttactcctgtgtcc 522

                                                                       
Query: 287 cagctgaatgttctttgatacagtgagcagttgttggatttgatcataagcaatagaaaa 346
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 521 cagctgaatgttctttgatacagtgagcagttcttggatttgatcataagcaatagaaaa 462

                                                                       
Query: 347 acaaggtgagaccacctgactctgccagtggctttgaagtgtttgccttgtaataaagtg 406
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 461 acaaggtgagaccacctgactctgccagtggctttgaagtgtttgccttgtaataaagtg 402

                                                                       
Query: 407 agtatgttactcaccccaaagtagtgacattctggttacgtggtcagtaccactcccacc 466
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 agtatgttactcaccccaaagtagtgacattctggttacgtggtcagtaccactcccacc 342

                                                                       
Query: 467 caagccagggcatgccaggttataggtgggaaaaggttgtcagttgaagttttaattata 526
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 caagccagggcatgccaggttataggtgggaaaaggttgtcagttgaagttttaattata 282

                        
Query: 527 cttagtagacaaa 539
           |||||||||||||
Sbjct: 281 cttagtagacaaa 269


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 539
Length of database: 939
Length adjustment: 10
Effective length of query: 529
Effective length of database: 929
Effective search space:   491441
Effective search space used:   491441
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)