Query= MSMg01no416_l23.b1 MSMg01no416_l23.b1 CHROMAT_FILE:
MSMg01no416_l23.b1 PHD_FILE: MSMg01no416_l23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:35:26 2005
(448 letters)
>mm_chr9_89178079_89178926
Length = 848
Score = 745 bits (385), Expect = 0.0
Identities = 427/441 (96%), Gaps = 2/441 (0%)
Strand = Plus / Plus
Query: 5 gaattcagaatgtctacccaacagctgtgacttttctttgcaactgcagagaagtattgg 64
|||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcagaatgtcaacaaaacagctgtgacttttctttgcaactgcagagaagtattgg 264
Query: 65 gaacatcaacagaacaacatttcttttctcttagctgtaccgaggacaacggaagataaa 124
|||||||||||||||||||||||||||||||||||||||| | |||||||||||||| ||
Sbjct: 265 gaacatcaacagaacaacatttcttttctcttagctgtactgtggacaacggaagatgaa 324
Query: 125 aaacatcatcctttccgtttagcacatgtcttcttccaccctgggcactctggagaaagt 184
|||||||||||||| | || |||||||||||||||||||||||| ||||||||||||| |
Sbjct: 325 aaacatcatccttt-cattgagcacatgtcttcttccaccctggacactctggagaaaat 383
Query: 185 tcttgcgcattgactgaagcatctgtgtgctgcttctggtgcccctttggacaagtgttc 244
|||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 384 tcttgcgcgttgactgaagcatctgggtgctgcttctggtgcccctttggacaagtgttc 443
Query: 245 acggacagtcatgtgacactttgcctcttggcttcttaggatctcctttgcccatgacta 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 acggacagtcatgtgacactttgcctcttggcttcttaggatctcctttgcccatgacta 503
Query: 305 gttcttttttgttttcaagtgaggaacagagttacctggcactcatcctgttctaacttg 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 gttcttttttgttttcaagtgaggaacagagttacctggcactcatcctgttctaacttg 563
Query: 365 ccctggcactattcagtctttttt-cccctgccttttgttttggtgtgtgtgtgtgtgtg 423
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 564 ccctggcactattcagtctttttttcccctgccttttgttttggtgtgtgtgtgtgtgtg 623
Query: 424 tgtgtgtgtgtgtgtgtgtgt 444
|||||||||||||||||||||
Sbjct: 624 tgtgtgtgtgtgtgtgtgtgt 644
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 50
Number of extensions: 13
Number of successful extensions: 13
Number of sequences better than 10.0: 1
Number of HSP's gapped: 9
Number of HSP's successfully gapped: 1
Length of query: 448
Length of database: 848
Length adjustment: 10
Effective length of query: 438
Effective length of database: 838
Effective search space: 367044
Effective search space used: 367044
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no416_l23.g1 MSMg01no416_l23.g1 CHROMAT_FILE:
MSMg01no416_l23.g1 PHD_FILE: MSMg01no416_l23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:35:26 2005
(441 letters)
>mm_chr9_89387422_89388263
Length = 842
Score = 712 bits (368), Expect = 0.0
Identities = 431/460 (93%), Gaps = 20/460 (4%)
Strand = Plus / Minus
Query: 1 aggggtacgtcctagaaacaggaaagagggtcacattttttaaatgtaaaatctaattca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 777 aggggtacgtcctagaaacaggaaagagggtcacattttttaaatgtaaaatctaattca 718
Query: 61 taaagttaaaaccttaacgactgccattcttaacaagcaacattcaatcttgcatgtata 120
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 717 taaagttaaaaccttaacaactgccattcttaacaagcaacattcaatcttgcatgtata 658
Query: 121 tgtagatattaaatgtacatacacatgca-----a-acagagag---g-gggggggagag 170
|||||||||| |||||||||||||||||| | |||||||| | | | | |||||
Sbjct: 657 tgtagatatt-aatgtacatacacatgcacacacacacagagagagagagagagagagag 599
Query: 171 a--gagggagaga------gagagagagaatagaaggaagagcagagtaacagcgataga 222
| |||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct: 598 agggagggagagagggagggagagagagaatagaaggaagagcagagtaacagcaataga 539
Query: 223 cagtaagaaagcaatatatttactttaatgttctgcaagtagataatataaaacaaataa 282
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 cagtaagatagcaatatatttactttaatgttctgcaagtagataatataaaacaaataa 479
Query: 283 gaatacaaaggactctgtctgaat-aaaaatttagtaaaacaaattgtcaaaatttataa 341
|||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||
Sbjct: 478 gaatacaaaggactctgtctgaataaaaaatttagtaagacaaattgtcaaaatttataa 419
Query: 342 ccatgtgactacaaaaccttaccctgtgctgggcagtggtggctcacacctttaatccca 401
||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||
Sbjct: 418 ccatgtgactacaaaaccttaccctgtgccgggcagtggtggcgcacacctttaatccca 359
Query: 402 gcacttgggaggcagaggcaggcagatttctgagttcgag 441
||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 gcacttgggaggcagaggcaggcagatttctgagttcgag 319
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 441
Length of database: 842
Length adjustment: 9
Effective length of query: 432
Effective length of database: 833
Effective search space: 359856
Effective search space used: 359856
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
