MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	MSMg01-417A18
Chromosome	9 (Build37)
Map Location	96,208,728 - 96,209,258
singlet/doublet	singlet
Overlap gene	Tfdp2
Upstream gene	Chst2, LOC667088, 2610101N10Rik, LOC100040097, Paqr9, Pcolce2, Trpc1, AI427122, 1700065D16Rik, Xrn1, Gk5
Downstream gene	1110029I05Rik, Atp1b3, BC043934, Rnf7, LOC667174, Rasa2, Zbtb38, EG622512, LOC100040230, LOC667216, Acpl2, LOC19034, LOC667226, Spsb4, LOC100040254, Slc25a36, EG622727, LOC384971
Link	Open Mouse BAC browser

Click to get alignment info.

name	Chst2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:54371 MGI:1891160
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC667088 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:667088
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 Proteins pseudo : _no_value

name	2610101N10Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:67958 MGI:1915208
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100040097 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100040097
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 Protein

name	Paqr9 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:75552 MGI:1922802
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Pcolce2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:76477 MGI:1923727
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Trpc1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:22063 MGI:109528
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	AI427122 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:102502 MGI:2143039
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	1700065D16Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:73410 MGI:1920660
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Xrn1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:24127 MGI:891964
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Gk5 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:235533 MGI:2443336
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Tfdp2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:211586 MGI:107167
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	1110029I05Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:319491 MGI:2442132
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 38 ESTs

name	Atp1b3 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:11933 MGI:107788
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	BC043934 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:270185 MGI:2679715
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Rnf7 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:19823 MGI:1337096
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC667174 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:667174
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 5 Proteins pseudo : _no_value

name	Rasa2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:114713 MGI:2149960
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Zbtb38 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:245007 MGI:2442866
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	EG622512 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:622512 MGI:3643500
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 2 ESTs

name	LOC100040230 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100040230
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 Proteins pseudo : _no_value

name	LOC667216 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:667216
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 299 ESTs, 6 Proteins pseudo : _no_value

name	Acpl2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:235534 MGI:2442444
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC19034 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:19034
definition	note : peptidylprolyl isomerase A-like pseudogene pseudo : _no_value

name	LOC667226 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:667226
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 16 mRNAs, 585 ESTs, 20 Proteins pseudo : _no_value

name	Spsb4 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:211949 MGI:2183445
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100040254 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100040254
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 15 ESTs

name	Slc25a36 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:192287 MGI:1924909
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	EG622727 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:622727 MGI:3647131
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 18 mRNAs, 1549 ESTs, 13 Proteins

name	LOC384971 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:384971
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 13 Proteins pseudo : _no_value

name	Chst2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:9055185 GeneID:54371 MGI:1891160
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : carbohydrate sulfotransferase 2 transcript_id : NM_018763.1

name	2610101N10Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:46358330 GeneID:67958 MGI:1915208
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 2610101N10 gene transcript_id : NM_026476.1

name	LOC100040097 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149260155 GeneID:100040097
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 Protein product : similar to Ubtf protein transcript_id : XM_001474084.1

name	Paqr9 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:116089313 GeneID:75552 MGI:1922802
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : progestin and adipoQ receptor family member IX transcript_id : NM_198414.2

name	Pcolce2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:84794576 GeneID:76477 MGI:1923727
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : procollagen C-endopeptidase enhancer 2 transcript_id : NM_029620.2

name	Trpc1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118130097 GeneID:22063 MGI:109528
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : transient receptor potential cation channel, subfamily C, member 1 transcript_id : NM_011643.2

name	AI427122 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141803101 GeneID:102502 MGI:2143039
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : expressed sequence AI427122 transcript_id : NM_001033210.2

name	1700065D16Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:34328315 GeneID:73410 MGI:1920660
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 1700065D16 gene transcript_id : NM_028533.2

name	Xrn1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:115495454 GeneID:24127 MGI:891964
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : 5'-3' exoribonuclease 1 transcript_id : NM_011916.2

name	Gk5 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142343959 GeneID:235533 MGI:2443336
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : glycerol kinase 5 (putative) transcript_id : NM_177352.3

name	Tfdp2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142369689 GeneID:211586 MGI:107167
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : transcription factor Dp 2 transcript_id : NM_178667.3

name	1110029I05Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149260159 GeneID:319491 MGI:2442132
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 38 ESTs product : RIKEN cDNA 1110029I05 gene transcript_id : XM_001474212.1

name	Atp1b3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141803510 GeneID:11933 MGI:107788
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : ATPase, Na+/K+ transporting, beta 3 polypeptide transcript_id : NM_007502.2

name	BC043934 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142351520 GeneID:270185 MGI:2679715
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : cDNA sequence BC043934 transcript_id : NM_177770.3

name	Rnf7 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142369236 GeneID:19823 MGI:1337096
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : ring finger protein 7 transcript_id : NM_011279.2

name	Rasa2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:114158698 GeneID:114713 MGI:2149960
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RAS p21 protein activator 2 transcript_id : NM_053268.2

name	Zbtb38 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:117938319 GeneID:245007 MGI:2442866
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : zinc finger and BTB domain containing 38 transcript_id : NM_175537.3

name	EG622512 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94386330 GeneID:622512 MGI:3643500
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 2 ESTs product : predicted gene, EG622512 transcript_id : XM_897144.2

name	Acpl2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118130104 GeneID:235534 MGI:2442444
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : acid phosphatase-like 2 transcript_id : NM_153420.2

name	Spsb4 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:133892681 GeneID:211949 MGI:2183445
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : splA/ryanodine receptor domain and SOCS box containing 4 transcript_id : NM_145134.3

name	LOC100040254 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149260161 GeneID:100040254
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 15 ESTs product : hypothetical protein LOC100040254 transcript_id : XM_001474361.1

name	Slc25a36 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142361146 GeneID:192287 MGI:1924909
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : solute carrier family 25, member 36 transcript_id : NM_138756.3

name	EG622727 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149260172 GeneID:622727 MGI:3647131
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 11 mRNAs, 1399 ESTs, 13 Proteins product : predicted gene, EG622727, transcript variant 2 transcript_id : XM_906238.3

name	EG622727 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149260173 GeneID:622727 MGI:3647131
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 11 mRNAs, 1399 ESTs, 13 Proteins product : predicted gene, EG622727 transcript_id : XM_001474926.1

name	EG622727 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149260171 GeneID:622727 MGI:3647131
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 18 mRNAs, 1547 ESTs, 13 Proteins product : predicted gene, EG622727, transcript variant 1 transcript_id : XM_887179.3

name	Chst2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:9055186 GeneID:54371 MGI:1891160
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0008146 - sulfotransferase activity [Evidence IDA]; GO:0016740 - transferase activity [Evidence IEA] GO_process : GO:0005975 - carbohydrate metabolism [Evidence IEA]; GO:0006954 - inflammatory response [Evidence IEA]; GO:0006044 - N-acetylglucosamine metabolism [Evidence TAS] codon_start : 1 exception : mismatches in translation function : This enzyme catalyzes the transfer of sulfate from 3'-phosphoadenosine 5'-phosphosulfate to the position 6 of non-reducing GlcNAc in de-galactosylated L1L1. note : N-acetylglucosamine-6-O-sulfotransferase product : carbohydrate sulfotransferase 2 protein_id : NP_061233.1

name	2610101N10Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:46358331 GeneID:67958 MGI:1915208
definition	GO_function : GO:0003676 - nucleic acid binding [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0003723 - RNA binding [Evidence IEA] GO_process : GO:0006396 - RNA processing [Evidence IEA] codon_start : 1 exception : mismatches in translation product : U2-associated SR140 protein protein_id : NP_080752.1

name	LOC100040097 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149260156 GeneID:100040097
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001474134.1

name	Paqr9 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:116089314 CCDS:CCDS23409.1 GeneID:75552 MGI:1922802
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0004872 - receptor activity [Evidence IEA] codon_start : 1 product : progestin and adipoQ receptor family member IX protein_id : NP_940806.2

name	Pcolce2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:22095011 CCDS:CCDS23410.1 GeneID:76477 MGI:1923727
definition	GO_function : GO:0008201 - heparin binding [Evidence IEA] codon_start : 1 product : procollagen C-endopeptidase enhancer 2 protein_id : NP_083896.1

name	Trpc1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6755885 CCDS:CCDS23411.1 GeneID:22063 MGI:109528
definition	GO_component : GO:0016020 - membrane [Evidence IEA] GO_function : GO:0005262 - calcium channel activity [Evidence IEA]; GO:0005509 - calcium ion binding [Evidence IEA]; GO:0005216 - ion channel activity [Evidence IEA] GO_process : GO:0006816 - calcium ion transport [Evidence IEA]; GO:0006811 - ion transport [Evidence IEA]; GO:0006810 - transport [Evidence IEA] codon_start : 1 note : transient receptor protein 1 product : transient receptor potential cation channel, subfamily C, member 1 protein_id : NP_035773.1

name	AI427122 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:85986577 CCDS:CCDS23412.1 GeneID:102502 MGI:2143039
definition	codon_start : 1 product : hypothetical protein LOC102502 protein_id : NP_001028382.1

name	1700065D16Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:34328316 GeneID:73410 MGI:1920660
definition	codon_start : 1 product : hypothetical protein LOC73410 protein_id : NP_082809.2

name	Xrn1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:115495455 GeneID:24127 MGI:891964
definition	GO_function : GO:0003677 - DNA binding [Evidence IEA]; GO:0004527 - exonuclease activity [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]; GO:0004518 - nuclease activity [Evidence IEA]; GO:0003723 - RNA binding [Evidence IEA] codon_start : 1 product : 5'-3' exoribonuclease 1 protein_id : NP_036046.2

name	Gk5 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:28893497 GeneID:235533 MGI:2443336
definition	GO_function : GO:0004370 - glycerol kinase activity [Evidence IEA]; GO:0016301 - kinase activity [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA] GO_process : GO:0005975 - carbohydrate metabolism [Evidence IEA]; GO:0006072 - glycerol-3-phosphate metabolism [Evidence IEA] codon_start : 1 product : glycerol kinase 5 (putative) protein_id : NP_796326.1

name	Tfdp2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:30520037 CCDS:CCDS23413.1 GeneID:211586 MGI:107167
definition	GO_component : GO:0005635 - nuclear envelope [Evidence TAS]; GO:0005634 - nucleus [Evidence IEA]; GO:0005667 - transcription factor complex [Evidence IC] [Evidence IEA] GO_function : GO:0003677 - DNA binding [Evidence IEA]; GO:0003700 - transcription factor activity [Evidence IEA] [Evidence IDA] GO_process : GO:0007049 - cell cycle [Evidence IEA]; GO:0000074 - regulation of progression through cell cycle [Evidence IEA]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IDA] [Evidence IEA]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 exception : mismatches in translation note : E2F dimerization partner 2 product : transcription factor Dp-2 protein_id : NP_848782.1

name	1110029I05Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149260160 GeneID:319491 MGI:2442132
definition	codon_start : 1 product : hypothetical protein LOC319491 protein_id : XP_001474262.1

name	Atp1b3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6680744 CCDS:CCDS23414.1 GeneID:11933 MGI:107788
definition	GO_component : GO:0005737 - cytoplasm [Evidence IDA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0030955 - potassium ion binding [Evidence IEA]; GO:0031402 - sodium ion binding [Evidence IEA]; GO:0005391 - sodium:potassium-exchanging ATPase activity [Evidence IEA] GO_process : GO:0006811 - ion transport [Evidence IEA]; GO:0006813 - potassium ion transport [Evidence IEA]; GO:0006814 - sodium ion transport [Evidence IEA]; GO:0006810 - transport [Evidence IEA] codon_start : 1 note : ATPase, Na+/K+ beta 3 polypeptide; Na K-ATPase beta-3 subunit product : Na+/K+ -ATPase beta 3 subunit protein_id : NP_031528.1

name	BC043934 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:29244278 GeneID:270185 MGI:2679715
definition	codon_start : 1 product : hypothetical protein LOC270185 protein_id : NP_808438.1

name	Rnf7 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:110625597 GeneID:19823 MGI:1337096
definition	GO_component : GO:0005737 - cytoplasm [Evidence IDA]; GO:0005634 - nucleus [Evidence IDA] GO_function : GO:0046872 - metal ion binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0006916 - anti-apoptosis [Evidence IDA]; GO:0008637 - apoptotic mitochondrial changes [Evidence IDA]; GO:0006919 - caspase activation [Evidence IDA]; GO:0008631 - induction of apoptosis by oxidative stress [Evidence IDA]; GO:0006512 - ubiquitin cycle [Evidence IEA] codon_start : 1 product : ring finger protein 7 protein_id : NP_035409.1

name	Rasa2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:114158699 CCDS:CCDS23416.1 GeneID:114713 MGI:2149960
definition	GO_component : GO:0005622 - intracellular [Evidence IEA] GO_function : GO:0005096 - GTPase activator activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0007242 - intracellular signaling cascade [Evidence IEA]; GO:0051056 - regulation of small GTPase mediated signal transduction [Evidence IEA] codon_start : 1 product : RAS p21 protein activator 2 protein_id : NP_444498.2

name	Zbtb38 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:117938320 GeneID:245007 MGI:2442866
definition	GO_component : GO:0005622 - intracellular [Evidence IEA]; GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0046872 - metal ion binding [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] codon_start : 1 note : CtBP-interacting BTB zinc finger protein; Zenon homolog product : zinc finger and BTB domain containing 38 protein_id : NP_780746.2

name	EG622512 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:82930630 GeneID:622512 MGI:3643500
definition	codon_start : 1 product : hypothetical protein protein_id : XP_902237.1

name	Acpl2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:23510309 CCDS:CCDS23418.1 GeneID:235534 MGI:2442444
definition	GO_component : GO:0005575 - cellular_component [Evidence ND] GO_function : GO:0003993 - acid phosphatase activity [Evidence IEA]; GO:0003674 - molecular_function [Evidence ND] GO_process : GO:0008150 - biological_process [Evidence ND] codon_start : 1 product : acid phosphatase-like 2 protein_id : NP_700469.1

name	Spsb4 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:21553087 CCDS:CCDS23419.1 GeneID:211949 MGI:2183445
definition	GO_process : GO:0007242 - intracellular signaling cascade [Evidence IEA] codon_start : 1 note : SPRY domain-containing SOCS box protein SSB-4 product : SPRY domain-containing SOCS box 4 protein_id : NP_660116.1

name	LOC100040254 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149260162 GeneID:100040254
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001474411.1

name	Slc25a36 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:20270293 CCDS:CCDS23420.1 GeneID:192287 MGI:1924909
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA] codon_start : 1 product : solute carrier family 25, member 36 protein_id : NP_620095.1

name	EG622727 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149260174 GeneID:622727 MGI:3647131
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001474976.1

name	EG622727 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:82930638 GeneID:622727 MGI:3647131
definition	codon_start : 1 product : hypothetical protein isoform 1 protein_id : XP_892272.1

name	EG622727 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:82930827 GeneID:622727 MGI:3647131
definition	codon_start : 1 product : hypothetical protein isoform 2 protein_id : XP_911331.1

name	LOC667088 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:667088
definition	number : 1 pseudo : _no_value

name	LOC667174 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:667174
definition	number : 1 pseudo : _no_value

name	LOC667174 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:667174
definition	number : 2 pseudo : _no_value

name	LOC100040230 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100040230
definition	number : 1 pseudo : _no_value

name	LOC100040230 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100040230
definition	number : 2 pseudo : _no_value

name	LOC384971 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:384971
definition	number : 2 pseudo : _no_value

name	LOC384971 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:384971
definition	number : 1 pseudo : _no_value

name	LOC667216 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149260169 GeneID:667216
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 299 ESTs, 6 Proteins product : similar to hCG2016250 pseudo : _no_value transcript_id : XR_031882.1

name	LOC667226 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149260170 GeneID:667226
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 16 mRNAs, 585 ESTs, 20 Proteins product : similar to H3 histone, family 3B pseudo : _no_value transcript_id : XR_031950.1

clone name	MSMg01-347L16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-147I18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-063F24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-450B24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-369J19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-309K23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-475B10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-451I06
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-474E08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-141C24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-378G21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-059P07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-210A18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-472M22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-106A07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-128J09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-496P15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-489D07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-400J01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-536A01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-366D18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-137K19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-143P15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-355N03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-383H02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-302B03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-325J08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-415A20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-463J06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-095A02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-288A15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-185M05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-302G09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-326M15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-508G03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-120B16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-354M16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-392D23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-450E08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-528G09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-179A11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-198P20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-430F01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-085B05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-051E02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-413A02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-491C14
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-142B13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-417A18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-098I15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-335E22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-148O07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-431C04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-303D14
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-303E08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-303E14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-303E12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-372K03
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-167F08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-057O21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-370D05
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-264C06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-379L24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-531K04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-060D04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-101D20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-073D11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-474O24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-206J02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-161H10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-100I05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-403M04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-133F16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-434C13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-369L15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-543G03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-349L04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-075F17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-495M14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-140E03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-177F18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-289I11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-085M10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-381C14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-055P12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-173B22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-297D05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-281P13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-274M07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-278C10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-007N15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-169D02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-285G21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-302J14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-048J06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-129F14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-252N12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-297A07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-299L08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-016B20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-327C22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-025K18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-076B18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-102C09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-210C18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-089O06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-028F03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-064B09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-253E15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-223I02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-209J11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-214C22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-101J12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-098P21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-076L07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-325E06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-201E11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-154P03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-101B08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-186E23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-185B03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-272F04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-176G24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-213O14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-274M18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-274M24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-232D08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-097B15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-291I11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-151J14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-214H15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-222L09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-330H22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-311K08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-050B11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-265I21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-226G17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-105P14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-198B16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-135B14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-104L21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-072P04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-199C09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-180P19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-140I02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-314A24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-172D06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-130H10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-161B08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-150G05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-033B11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-211C01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-156M11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-231J02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-313A11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-217O02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-266I21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-243C11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-331E13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-332E07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-251I02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-225K17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-190J20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-001M10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-029P07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-038A09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-082P19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-101B03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-124P07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-129H05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-168C05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-141D20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-033M11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-267M06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-302E03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-297L11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-185P23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-086D22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-322I04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-289O08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-184P24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-208G14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-326M07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-197O19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-204L21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-341K06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-122P24
singlet/doublet	doublet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	MSMg01-417A18.T7 (MSMg01no417_a18.b1)	MSMg01-417A18.TJ (MSMg01no417_a18.g1)
ACC	AG512720	AG512721
length	766	777
length of high quality (start - end)	550 (65 - 614)	514 (77 - 590)
definition	CHROMAT_FILE: MSMg01no417_a18.b1 PHD_FILE: MSMg01no417_a18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:35:48 2005	CHROMAT_FILE: MSMg01no417_a18.g1 PHD_FILE: MSMg01no417_a18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:35:48 2005
singlet/doublet	singlet	---
BLAST hit	unique	no hit data
sequence	TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA ATTCAACACTGTCCTAGAGAGACGGCTCAGCAGGTAAGAGCACTGGCTGC TCTTCGAGAGGTCCTCAGTTCAGTTCCCAGCAACCACATGGTGGCTCACA ACCATCAGTAATGGGATCTGATGCCCTCTTCTGGTGTGTCTGAAGTCAGC TACATATATGCATTAAATAAATAAAATGGATTCAAGAACTAAAAATTAAA ATCAGTTATTTACTTTATAATTTATAAAAGCTAGAGATAAATTCACACAA TATCTAGCCCAGTAAAATGTTATGTGTCAAGATTATTATTCACAGCCACC AACTACAGAAACCTATGTCAGGAAGGACTGCTAACTAACATCCTAACACC AAAGTCTTCACAACGGCTAACATCTCTGGAAGCGACCTATAAATGTCAGA CTGTAACACATCACAGCAATTATTTTCTAAAGCTAGTCTCATCTTTTATG AGGAATATGAAATTACCTTCTTAGGTTGAAGGGCTTCAGCAGCTGAGCGT GTAGCACATAACCTCAGGAGGTTGAGCACAGGATTGGGATAAGCTGGTCA GCATTGATCAACCAGGAGAACTGCGTAAGAGACTTGTCTTCAAAACAATT TATATAATATAAATTACAAAATAAAGTGTCCGGAAAATGCGGAACCATTG ACCTTTAGCCGATTACGGGCACTGTTTCCCCAGGCCAAAAACCATTTTGG TTCTGTGGCTTGGGGG	CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXCAGGACAGCCCAGGCTGCACAGGG AAACCCTGTCTCGAAAAGCCAAAAACTAAAACCAAAAAAAGAAAAAGAAA AAGAAAAAGAAAAAGAAAAAGAAAAAGAAAAAGAAAAAGAAAGAAAGAAA GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGGAAAGGAAGAGTTGGTT TGAGCTCAGCCTGAAGGCAGCTGGTCACATGATGAGAGGCCAAATCTTTT TAAGTTCAGACTCCATTTTAGAGAAGCTGACCTAAGTTTGAACTCAGGTA AACTAACAGGCTGGTATCTAGCATTGGTTTCCAAGTTGCCCCCAAACAAA GCCCAAGCCTAGCTCCAGCCTCTAGGCTAATCCCCAACAAGACCAGCATC TCCAGGTTATTCCCCCAGCAAACCTACACCCCCAGGTTACAAGGCCACCT CCTGCCTAACGATCACCAATGCAGAGGGGAGCAGAAGTTAAGCTTATATG ACTAACTCCCAGCACCAGNCAATTATGTTAAAGGGCACAGGAGCTTTCCC ATTAGATGCTTGCACACTTACCCCCGCTTGCTGCTTATCTAAGGCTTGCT CCATAGATATTAAGAGCTCCCCCCAACCCCACCAAAAACATCCTTTGGGG AATATAAGGGGGGTGGGGTAAGAGCTTCCCCCCCCTTTTCTCCTATTTAT CCCCCATCTTGTCCCCCCTATTCCCCC
quality values	Open. Hide. 7 12 6 6 6 7 12 21 28 34 37 37 37 31 30 37 28 29 30 31 31 31 48 59 30 29 30 17 16 10 16 12 14 9 12 12 12 18 18 19 19 10 14 14 26 33 59 59 36 36 21 21 21 15 14 15 18 16 10 6 6 6 7 7 21 24 31 31 37 37 41 43 50 50 53 36 36 36 36 36 42 53 53 53 57 59 59 59 57 57 57 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 59 59 59 57 57 68 57 68 68 68 68 68 68 57 57 57 57 68 68 68 68 68 68 57 57 57 68 68 68 68 68 50 50 50 50 50 50 50 68 57 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 62 62 62 62 62 62 68 68 62 62 62 62 62 62 62 62 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 62 62 43 43 43 43 52 52 62 62 62 62 62 62 62 62 62 62 68 68 68 68 68 68 68 68 62 62 62 62 68 68 68 68 68 68 68 68 68 68 68 68 68 68 59 59 57 57 57 57 57 57 59 59 59 68 68 68 68 68 68 59 57 57 57 57 57 57 59 68 68 68 68 68 68 68 68 57 57 57 59 59 59 59 59 68 59 59 59 59 59 59 59 59 59 59 57 57 57 57 57 57 57 57 59 59 68 68 68 68 68 57 68 59 59 59 59 59 68 68 68 68 57 57 57 57 59 59 59 68 68 68 68 57 57 57 59 59 59 59 59 59 59 59 59 59 59 59 59 59 59 68 59 59 59 59 59 59 57 59 59 59 59 59 57 57 54 54 59 59 59 59 59 57 59 43 43 43 54 54 57 59 68 68 68 59 59 57 48 48 48 57 57 59 48 59 59 57 57 57 57 57 48 59 48 48 47 46 34 34 34 43 44 41 41 44 59 43 41 37 41 43 34 34 28 23 23 31 30 37 37 27 27 17 17 17 30 30 39 39 35 35 35 39 30 34 35 26 26 32 37 30 31 28 22 24 21 20 10 10 10 20 18 23 23 32 31 35 26 29 19 19 16 15 17 19 20 23 20 22 28 30 34 25 24 28 28 28 34 37 32 32 31 37 28 31 28 25 22 21 15 14 12 20 11 11 11 12 16 19 24 17 16 15 15 12 18 16 9 9 10 10 9 9 12 10 6 6 6 8 8 13 17 18 17 14 15 12 8 8 8 8 8 8 6 10 6 7 7 10 19 14 15 8 8 8 8 8 9 8 8 8 9 13 13 17 17 17 16 16 16 24 27 37 22 20 9 9 9 14 14 17 17 13 13 13 18 21 23 19 16 9 8 8 6 6 6 10 9 9 10 10 10 10 8 8 9 10 8 8 9 10 11 13 13 13 16 18 12 12 12 11 9 9 9 11 11 14 10 9 9 9 10 10 24 26 18 8 8 8 8 8 8 12 11 11 11 16 12 10 10 10 12 12	Open. Hide. 6 6 6 13 15 8 8 8 8 7 7 9 7 13 13 29 25 34 34 44 39 39 39 34 39 34 34 41 21 21 13 13 10 10 10 11 16 19 19 13 18 18 30 23 37 37 32 32 35 30 30 30 33 33 33 44 44 27 22 11 12 10 10 10 10 11 26 34 57 57 40 47 42 42 50 42 42 42 42 47 53 68 50 50 50 54 57 57 57 68 68 68 68 50 50 50 50 48 48 68 50 50 51 57 57 46 47 43 57 57 68 68 68 68 68 68 68 57 57 57 57 57 57 57 68 68 68 68 68 68 57 57 57 57 57 57 59 68 68 68 68 59 59 59 59 59 59 59 59 59 57 59 59 59 59 59 59 59 59 57 57 57 59 59 59 59 52 52 52 59 59 59 57 57 57 59 59 59 68 59 59 59 59 59 59 59 59 59 59 57 59 59 59 59 68 68 68 68 68 68 68 59 59 59 59 59 59 59 59 59 59 68 59 59 59 59 59 59 59 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 62 62 68 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 68 62 62 62 62 62 62 62 68 68 68 62 62 62 62 62 62 62 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 62 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 62 62 62 62 68 68 68 68 68 62 62 52 52 52 62 62 62 62 62 62 62 68 68 68 68 68 68 68 59 59 59 59 68 68 68 68 68 59 59 59 59 57 57 57 68 68 68 68 68 57 57 57 59 59 59 59 59 59 59 59 59 59 59 59 68 68 59 59 59 59 59 68 68 68 59 59 57 57 57 59 59 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 59 59 59 59 57 57 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 57 57 57 57 57 54 57 59 59 59 68 68 68 57 57 57 59 57 59 59 59 59 57 54 54 54 54 54 57 57 57 48 48 48 57 59 59 59 59 59 59 59 59 59 57 59 59 42 47 47 47 47 47 48 48 48 48 43 47 47 47 41 59 41 32 32 39 39 39 47 47 59 47 50 48 48 48 48 48 59 41 41 41 41 41 41 37 41 43 44 47 47 43 43 32 27 25 25 34 34 41 41 40 37 37 37 40 40 43 43 39 39 30 30 32 39 43 39 34 28 25 25 34 34 37 23 22 3 0 3 19 17 35 33 31 28 24 20 20 30 32 39 32 32 14 15 10 10 10 12 15 15 18 22 23 15 11 9 8 8 8 9 12 9 9 9 11 11 18 20 17 13 11 10 10 9 8 8 8 8 13 15 19 8 8 8 8 8 8 10 12 14 9 9 9 8 8 8 8 8 8 8 6 6 8 8 15 12 25 19 22 19 13 13 10 10 10 9 9 8 8 8 7 6 7 7 7 7 8 18 34 10 9 9 9 9 10 19 18 11 11 11 13 17 13 13 9 8 10 8 12 10 10 13 15 10 12 11 14 10 12 10 10 9 9 9 12 10 10 7 9 9 9 10 10 10 10 9 9 9 12 11 11 11 10 10 10 16 16 14 27 22 12 15 13 16 13 13 12 12 10 13 15 13 16 10 10 10 10 8 13 8 8 8 7 6 8 8 10 10 9 9 10 8 8 8 8 10 7 9 9 12 12 19 17 14 14

Alignment Information

BAC End 1

BAC End 2

Query= MSMg01no417_a18.b1 MSMg01no417_a18.b1 CHROMAT_FILE:
MSMg01no417_a18.b1 PHD_FILE: MSMg01no417_a18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:35:48 2005
         (550 letters)



>mm_chr9_96208507_96209458
          Length = 952

 Score =  901 bits (466), Expect = 0.0
 Identities = 512/532 (96%), Gaps = 12/532 (2%)
 Strand = Plus / Plus

                                                                       
Query: 30  tggctgctcttcgagaggtcctcagttc-agttcccagcaaccacatggtggctcacaac 88
           |||||||||||| ||||||||||||||| | |||||||||||||||||||||||||||||
Sbjct: 222 tggctgctcttccagaggtcctcagttcta-ttcccagcaaccacatggtggctcacaac 280

                                                                       
Query: 89  catcagtaatgggatctgatgccctcttctggtgtgtctgaagtcagctacatatatgca 148
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 281 catcagtaatgggatctgatgccctcttctggtgtgtctgaagacagctacatatatgca 340

                                                                       
Query: 149 ttaaataaataaa--------atggattcaagaactaaaaa-ttaaaatcagttatttac 199
           |||||||||||||        |||||||||||||||||||| ||||||||||||||||||
Sbjct: 341 ttaaataaataaataaataaaatggattcaagaactaaaaaattaaaatcagttatttac 400

                                                                       
Query: 200 tttataatttataaaagctagagataaattcacacaatatctagcccagtaaaatgttat 259
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 tttataatttataaaagctagagataaattcacacaatatctagcccagtaaaatgttat 460

                                                                       
Query: 260 gtgtcaagattattattcacagccaccaactacagaaacctatgtcaggaaggactgcta 319
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 461 gtgtcaagattattattcacagccaccaacttcagaaacctatgtcaggaaggactgcta 520

                                                                       
Query: 320 actaacatcctaacaccaaagtcttcacaacggctaacatctctggaagcgacctataaa 379
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 521 actaacatcctaacaccaaagtcttcacaacggctaacatctctggaagcaacctataaa 580

                                                                       
Query: 380 tgtcagactgtaacacatcacagcaattattttctaaagctagtctcatcttttatgagg 439
           ||||||||||||||||||| | ||||||| ||||||||||||||||| ||||||||||||
Sbjct: 581 tgtcagactgtaacacatctcggcaattactttctaaagctagtctcgtcttttatgagg 640

                                                                       
Query: 440 -aatatgaaattaccttcttaggttgaagggcttcagcagctgagcgtgtagcacataac 498
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 641 gaatatgaaattaccttcttaggttgaagggcttcagcagctgagcgtgtagcacataac 700

                                                               
Query: 499 ctcaggaggttgagcacaggattgggataagctggtcagcattgatcaacca 550
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 701 ctcaggaggttgagcacaggattgggataagctggtcagcattgatcaacca 752


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 550
Length of database: 952
Length adjustment: 10
Effective length of query: 540
Effective length of database: 942
Effective search space:   508680
Effective search space used:   508680
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

BAC Information

Search Parameter

Search Result

BAC

BAC End Information

Alignment Information