BAC Information

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BAC

Clone NameMSMg01-417G08
Chromosome9 (Build37)
Map Location 53,343,140 - 53,343,617
singlet/doubletsinglet
Overlap geneAtm
Upstream geneAI593442, Gm1715, Ddx10, Exph5, Kdelc2, 4930550C14Rik
Downstream geneNpat, Acat1, Cul5, Rab39, EG434404, LOC100038958, Slc35f2, Sln, LOC100038996, Elmod1, Tnfaip8l3, Cyp19a1, LOC100039064, Gldn, Dmxl2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-417G08.T7 (MSMg01no417_g08.b1)MSMg01-417G08.TJ (MSMg01no417_g08.g1)
ACCAG512986AG512987
length760763
length of high quality
(start - end)
324 (71 - 394)478 (77 - 554)
definitionCHROMAT_FILE: MSMg01no417_g08.b1 PHD_FILE: MSMg01no417_g08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:36:16 2005CHROMAT_FILE: MSMg01no417_g08.g1 PHD_FILE: MSMg01no417_g08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:36:16 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TGATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCAATCCCTTCTCCCTCCATGTCTACCTTCAGAATATCTCCTAG
CCTTAGTTAGATTACAGGTTCAACTTCCTTTCTCCTTCAGGACCCAAGAT
TCCTGAAATGCTTGAAAAGCTTTCCTTTGCCGATGAGGTATTTCAATACC
CTAACCCATCCCGGATGTTACCACCCCAAGTTCCCAAAATTACATAAGCC
TTGAATCATTCCAAGTAAAGTTGATGTGCCTCCCTGCAACTGGTCTTGGT
GTGTTATTACCAAACATACTCACTGGGTTTCCGAACCCCTCAATTTCCTC
CCCTGTGTAACCTTTGCCCTCGTGAACACACCAATGATCCTGAGGGCAGG
GAGTTGAGAGGTCAGGAGAATAAGGCAGGGCAGGTCATCTTTAGACAACG
GGCATAGAGGAAATAGTTTTGGAGGTCGCAGCCTCTGGTCATAAGGGAAG
AATTAGGTTTTGCTTTGCAGGGCATTATTCATATCTAGGCCCGGCTGGTG
CCTCATGCCTTTATTTCTTGAACTCTCGACCTACAGGCTTGCCTCATTTC
TGATTCTCTCGTTCCGTCTGTTACGAACCTTATTTTGTTTCGCCCTTTCT
TACTTTTTTTATTTCCTCCTTTCCTTCCTACTTCTCCTTTTCCTATCATA
TATTCCCTCCTTCTCTCCTCCTTGTCATACCTCTATTTCCGGCTTATTTA
CATTTCACAG
AACCGATGATAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXTTCCTGCGAAATTCAAGGCTAGCCTGGTCTACAGAAA
GAGTTCCAGGACAGCCAGGGCAACAGAGAAACCCTGACTCAAAAACAAAC
AAACCAACCAACCAAAAAGTGGTGGGTGGCAGAATCAAAGCTATCCAACT
AGATGAAGAGAGCTATCAAGTGAACAAATGCTGAGACATTAAAACAAGTA
ACATAGTTCAGCTCCCAACATTCAACTAAAAAAGCTTCCTAAGCAACAGC
CCCTGAACAGACAAATCAAATCTTCCTTTTGAGGGTTCAGTCAAGTTGAT
GCATTTTGACAATAATTACATCTCCCCTTCCCAGAAATAACCCCACCTGT
GGCATGTTAGTCTTGGCTAGTGGTAAAAAGCACTGGGGCTCAGTCAGGTA
TGGCAGGCCTAGGGGAGGCTCAGGCAGCACAATTGTGAGTTAGGGGCTAG
CCTGGGTTGCAAAAGGGTGGGTTCTATGGTCAGGCTGTATTGTTCGGATC
CAGGTCCATTTCAATAACAGTTATCCTACCTGTCACATGTTGATTAATCT
GGCACCTTGTTTCTGGATGTTAAATGACAAAATCGATACCTTATCTTCTT
TTATGAAGTTGTTTCCGTTTTTCGTTTCCCTCCCCCCCCACCACAAAACT
ATTTTTTTCTTTTCCCCCCCCTTTCACTTTCTCTCCCTTCTTTTATCCTC
CACTTTTTCCCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no417_g08.g1 MSMg01no417_g08.g1 CHROMAT_FILE:
MSMg01no417_g08.g1 PHD_FILE: MSMg01no417_g08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:36:16 2005
         (478 letters)



>mm_chr9_53342940_53343817
          Length = 878

 Score =  901 bits (466), Expect = 0.0
 Identities = 475/478 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   caaggctagcctggtctacagaaagagttccaggacagccagggcaacagagaaaccctg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caaggctagcctggtctacagaaagagttccaggacagccagggcaacagagaaaccctg 260

                                                                       
Query: 61  actcaaaaacaaacaaaccaaccaaccaaaaagtggtgggtggcagaatcaaagctatcc 120
           |||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct: 261 actcaaaaacaaacaaaccaaccaaccaaatagtggtgggtggcagaaccaaagctatcc 320

                                                                       
Query: 121 aactagatgaagagagctatcaagtgaacaaatgctgagacattaaaacaagtaacatag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aactagatgaagagagctatcaagtgaacaaatgctgagacattaaaacaagtaacatag 380

                                                                       
Query: 181 ttcagctcccaacattcaactaaaaaagcttcctaagcaacagcccctgaacagacaaat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttcagctcccaacattcaactaaaaaagcttcctaagcaacagcccctgaacagacaaat 440

                                                                       
Query: 241 caaatcttccttttgagggttcagtcaagttgatgcattttgacaataattacatctccc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 caaatcttccttttgagggttcagtcaagttgatgcattttgacaataattacatctccc 500

                                                                       
Query: 301 cttcccagaaataaccccacctgtggcatgttagtcttggctagtggtaaaaagcactgg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cttcccagaaataaccccacctgtggcatgttagtcttggctagtggtaaaaagcactgg 560

                                                                       
Query: 361 ggctcagtcaggtatggcaggcctaggggaggctcaggcagcacaattgtgagttagggg 420
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ggctcagtcaggtattgcaggcctaggggaggctcaggcagcacaattgtgagttagggg 620

                                                                     
Query: 421 ctagcctgggttgcaaaagggtgggttctatggtcaggctgtattgttcggatccagg 478
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ctagcctgggttgcaaaagggtgggttctatggtcaggctgtattgttcggatccagg 678


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 478
Length of database: 878
Length adjustment: 10
Effective length of query: 468
Effective length of database: 868
Effective search space:   406224
Effective search space used:   406224
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)