Query= MSMg01no417_g16.b1 MSMg01no417_g16.b1 CHROMAT_FILE:
MSMg01no417_g16.b1 PHD_FILE: MSMg01no417_g16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:36:17 2005
(515 letters)
>mm_chr9_7712202_7713118
Length = 917
Score = 870 bits (450), Expect = 0.0
Identities = 490/504 (97%), Gaps = 2/504 (0%)
Strand = Plus / Minus
Query: 4 ggaattctagggtttccttagacagtaggatgtgagcagtatttaaacagaagtttccgc 63
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 504 ggaattctagggtttccttagacggtaggatgtgagcagtatttaaacagaagtttccgc 445
Query: 64 ataattg--tttttttctgttaatgtatgttacttatgcattaataacagcaccagcagg 121
||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 444 ataattgtttttttttctgttaatatatgttacttatgcattaataacagcaccagcagg 385
Query: 122 gcagctgtgcttagagtcacactgggcatagagggagcaatggactctctgtgcctcact 181
|||||||||||||| ||||| ||||||| ||| |||||||||||||||||||||||||||
Sbjct: 384 gcagctgtgcttagtgtcacgctgggcacagaaggagcaatggactctctgtgcctcact 325
Query: 182 cggtcacttgatctgatccttgtcacatatctgtgggctctacttttctgaaaggcaata 241
| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 cagtcacttgatctggtccttgtcacatatctgtgggctctacttttctgaaaggcaata 265
Query: 242 gtggtacatgaagctaatgaggaggcacaaatgtcagtgacaaacctgaaggggccatgt 301
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 264 gtggtacatgaagctaatgaggaggcacaaatggcagtgacaaacctgaaggggccatgt 205
Query: 302 ccagtcacctaggagacactgctctggaaacatttgtgaagccatttctagagaagttta 361
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 cgggtcacctaggagacactgctctggaaacatttgtgaagccatttctagagaagttta 145
Query: 362 actaagtggagaagacccaccctcaaagtggcagcatcttccaatgggtcgctcagatgc 421
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 144 actaagtggagaagacccaccctcaaagtggcagcatcttccaatgggtagctcagatgc 85
Query: 422 aaagagttccaaggaaagagcttatgtgctgatccaccttctccgccacttcctgagtga 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 84 aaagagttccaaggaaagagcttatgtgctgatccaccttctccgccacttcctgagtga 25
Query: 482 gtgtgtccacccctgccatccttg 505
||||||||||||||||||||||||
Sbjct: 24 gtgtgtccacccctgccatccttg 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 515
Length of database: 917
Length adjustment: 10
Effective length of query: 505
Effective length of database: 907
Effective search space: 458035
Effective search space used: 458035
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no417_g16.g1 MSMg01no417_g16.g1 CHROMAT_FILE:
MSMg01no417_g16.g1 PHD_FILE: MSMg01no417_g16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:36:17 2005
(489 letters)
>mm_chr9_7592976_7593864
Length = 889
Score = 847 bits (438), Expect = 0.0
Identities = 483/512 (94%), Gaps = 24/512 (4%)
Strand = Plus / Plus
Query: 1 cccagctctgcatctctacctagatttggggtctgggggatcaaactcacagcaagtact 60
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 179 cccagctctgcgtctctacctagatttggggtctgggggatcaaactcacagcaagtact 238
Query: 61 ttactaactgctctccccaggcatgtagttattg-tttgaaaagcaagatatggtgctta 119
|||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||
Sbjct: 239 ttactaactgctctccccaggcatgtagttattgcttt-aaaagcaagatatggtgctta 297
Query: 120 gaggacctatttttctcacttaaagccaaagatgatgttagaatccaaatcttgtgtcat 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 gaggacctatttttctcacttaaagccaaagatgatgttagaatccaaatcttgtgtcat 357
Query: 180 ctattttcatctacagtcttctggaacatgaaggctctcccagcctgtactgcactcacc 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 ctattttcatctacagtcttctggaacatgaaggctctcccagcctgtactgcactcacc 417
Query: 240 accttcccaggaataacaagagccctccactcaccaagctactttctaccaaaaaaaaaa 299
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 accttcctaggaataacaagagccctccactcaccaagctactttctaccaaaaaaaaaa 477
Query: 300 aaaaaaaaa----------------------gtgatttcctgctcacttgcagcaaaacc 337
||||||||| |||||||||||||||||||||||||||||
Sbjct: 478 aaaaaaaaaaaaaaaaaaaaaaaaaaaaaaagtgatttcctgctcacttgcagcaaaacc 537
Query: 338 tagcaggctccattgcaatgagtttcctggctcttctgcaatgtgtttcacggtgttcta 397
|||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct: 538 tagcaggctccattgcaatgagtttcctggcttttttgcaatgtgtttcacggtgttcta 597
Query: 398 atttcattattgttgtggtttcttttctcaatatgtgtaaagaaagagaagcacactgca 457
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 598 atttcattattgttgtggtttcttttctcaatgtgtgtaaagaaagagaagcacactgca 657
Query: 458 tttcccattaagcaattctgtaacactacaaa 489
||||||||||||||||||||||||||||||||
Sbjct: 658 tttcccattaagcaattctgtaacactacaaa 689
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 489
Length of database: 889
Length adjustment: 10
Effective length of query: 479
Effective length of database: 879
Effective search space: 421041
Effective search space used: 421041
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
