BAC Information

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BAC

Clone NameMSMg01-417H01
Chromosome9 (Build37)
Map Location 59,036,133 - 59,181,572
singlet/doubletdoublet
Overlap geneAdpgk, Bbs4
Upstream geneIslr2, LOC665268, Pml, Stoml1, Loxl1, Tbc1d21, 6030419C18Rik, Cd276, Nptn, 2410076I21Rik, Hcn4, Neo1, LOC100040186, EG665330
Downstream geneArih1, LOC621119, 4930425N13Rik, Hexa, Brunol6, Parp6, Pkm2, 4933407I18Rik, Gramd2, Senp8, Myo9a, EG665385, LOC100040361, Nr2e3, EG665389, Thsd4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-417H01.T7 (MSMg01no417_h01.b1)MSMg01-417H01.TJ (MSMg01no417_h01.g1)
ACCAG513019AG513020
length745697
length of high quality
(start - end)
581 (50 - 630)202 (82 - 283)
definitionCHROMAT_FILE: MSMg01no417_h01.b1 PHD_FILE: MSMg01no417_h01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:36:19 2005CHROMAT_FILE: MSMg01no417_h01.g1 PHD_FILE: MSMg01no417_h01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:36:19 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(59,181,052 - 59,181,572)(59,036,133 - 59,036,334)
sequence
NNNTTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCAACAAAGTTACCTGGGCTATGCTTAGGTTGTGAAAGCTACT
TTCTTAGACATGATATTCCCACATAAGTACACCAAAGCTCTGTATTCACA
TTCTCCATTGTCCTACAGTGGTACTGATCTGGTTATCTTCATTCCATTAA
ACTGTAATTAGGCACAAGACCAACTGCACAGTGCCCTCCAGCTTAACAAG
CATGACCTGACTTACATAATGTTGGGGAAGATCCATTTACTGCAGGGAGA
CCTGGATAAAGCCATCGAGATCTACAAGAAAGCAGTAGAGTAAGTGTCTT
TTTCTCTTAGACATCAACCAGCATGTCCACCCTTTTAACACTGCAGCATG
AAGTTATCACCTACAAAGTTTATGCTCAAGAACAGAACAATTGAATAACA
AAACCTTGTGCACACGTATGCACGCACGCTCACATACACGCAATGATGCT
TGCCATTTTGTGTTGGGACAGATTGACAGTTATGCTGGAATGTATGCAGC
CCACAGGCCACAGGTTGACATACCTGCTGGAAGCAATGAGACAGTTACAT
GATTTACAGATAGTTCCTTCCTTCTGTAATAGTGTCTGCCCTATACTAGG
TGCTTCACAGGCCAAGCACTGGGGATTTAGTTCCTTACGTGGGTTTTTTT
CACCTTCAACTTGAATAACATGTTCCCAGCCCAATTGAAAGAAGA
NNCCCCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTATTTGCTCCTTTGCTCCT
TGCTTTTAAGAGAGCCGCATTTCTTTGGGCACCAAGTCAGGCAAAGAAAG
TTACAGACAGATTGCAAGCAGCCCATAGCGGCTGTCATGGGAAGAGGGAT
GAGAGGAGTCTGGGTGCTTTGTCCTTTTTAAGGAGAGCTATTCCGCTCCG
GAGGAGAAAGCGAAACAGTGTGGCTAATGCTTTTAGNCATTTTATTTTAC
TTCATTTTTTTTTTAATTTTTCCAGGCCCAAATTTTGGGAAAAAAAAGAA
AATTCTTGGGCCAAATCCTCTTTGGGGGTTTTACCCCGGGGTTTCTCCGG
GGAAAAAAAATTCTTTTTTCTCCCTTGGGGGGGCGCCCCCCCCCCCATAA
AAAATACTGATCCTCGTTGCATCCAACTTTCTTTTTTCCAAAACANNTCA
CATNTTNTACCAANNAACCTCCACCATCCNNNTTTTCNCATTTTTTCCTA
TAAAAAGAAAAAGTCCCTCCCCTCTCCGCTATCAAATAAAAAATAGTCGC
CTCGGCTTTACCCCAACATACAACAGCGTCTTTCCTTTCCTCTCTTCCTT
TTCCCTCCCCCTTTTCATATGGCTTTTGGTGGAGACTTCCTTCTCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no417_h01.b1 MSMg01no417_h01.b1 CHROMAT_FILE:
MSMg01no417_h01.b1 PHD_FILE: MSMg01no417_h01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:36:19 2005
         (581 letters)



>mm_chr9_59181052_59182032
          Length = 981

 Score =  953 bits (493), Expect = 0.0
 Identities = 514/521 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcaacaaagttacctgggctatgcttaggttgtgaaagctactttcttagacatga 64
           ||||||||||| | || |||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 521 gaattcaacaaggctagctgggctatgcttaggttgtgaaagctactttctcagacatga 462

                                                                       
Query: 65  tattcccacataagtacaccaaagctctgtattcacattctccattgtcctacagtggta 124
           | |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 461 tgttcccacataagtacacccaagctctgtattcacattctccattgtcctacagtggta 402

                                                                       
Query: 125 ctgatctggttatcttcattccattaaactgtaattaggcacaagaccaactgcacagtg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 ctgatctggttatcttcattccattaaactgtaattaggcacaagaccaactgcacagtg 342

                                                                       
Query: 185 ccctccagcttaacaagcatgacctgacttacataatgttggggaagatccatttactgc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 ccctccagcttaacaagcatgacctgacttacataatgttggggaagatccatttactgc 282

                                                                       
Query: 245 agggagacctggataaagccatcgagatctacaagaaagcagtagagtaagtgtcttttt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 281 agggagacctggataaagccatcgagatctacaagaaagcagtagagtaagtgtcttttt 222

                                                                       
Query: 305 ctcttagacatcaaccagcatgtccacccttttaacactgcagcatgaagttatcaccta 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 221 ctcttagacatcaaccagcatgtccacccttttaacactgcagcatgaagttatcaccta 162

                                                                       
Query: 365 caaagtttatgctcaagaacagaacaattgaataacaaaaccttgtgcacacgtatgcac 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 161 caaagtttatgctcaagaacagaacaattgaataacaaaaccttgtgcacacgtatgcac 102

                                                                       
Query: 425 gcacgctcacatacacgcaatgatgcttgccattttgtgttgggacagattgacagttat 484
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 101 gcacgctcacatgcacgcaatgatgcttgccattttgtgttgggacagattgacagttat 42

                                                    
Query: 485 gctggaatgtatgcagcccacaggccacaggttgacatacc 525
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 41  gctggaatgtatgcagcccacaggccacaggttgacatacc 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 581
Length of database: 981
Length adjustment: 10
Effective length of query: 571
Effective length of database: 971
Effective search space:   554441
Effective search space used:   554441
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no417_h01.g1 MSMg01no417_h01.g1 CHROMAT_FILE:
MSMg01no417_h01.g1 PHD_FILE: MSMg01no417_h01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:36:19 2005
         (202 letters)



>mm_chr9_59035933_59036534
          Length = 602

 Score =  391 bits (202), Expect = e-113
 Identities = 202/202 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tatttgctcctttgctccttgcttttaagagagccgcatttctttgggcaccaagtcagg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tatttgctcctttgctccttgcttttaagagagccgcatttctttgggcaccaagtcagg 260

                                                                       
Query: 61  caaagaaagttacagacagattgcaagcagcccatagcggctgtcatgggaagagggatg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 caaagaaagttacagacagattgcaagcagcccatagcggctgtcatgggaagagggatg 320

                                                                       
Query: 121 agaggagtctgggtgctttgtcctttttaaggagagctattccgctccggaggagaaagc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agaggagtctgggtgctttgtcctttttaaggagagctattccgctccggaggagaaagc 380

                                 
Query: 181 gaaacagtgtggctaatgcttt 202
           ||||||||||||||||||||||
Sbjct: 381 gaaacagtgtggctaatgcttt 402


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 202
Length of database: 602
Length adjustment: 8
Effective length of query: 194
Effective length of database: 594
Effective search space:   115236
Effective search space used:   115236
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)