NNTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTCTTTGCTTGATGCAATGAATGTATAAGAAGTGAGTTTAGCC
ACATGAAACTCAAGAAGGAAGACCCAAGTGTGGACTCTTTGCCCCTTCTT
AGAATTGGGAACAAAACACCCATGGAAGGAGTTACAGAGACAAAGTTTGG
AGCTGAGACAAAAGGATGAACCATCTAGTGACTACCATATCCAGAGATCT
ATCCCATAATCAGCCTCCAAATGCTGACACCATTGCAAACACTAGCAAGA
TTTTACTGATAGGACTCTGATATAGCTGTCTCTAACAAGACTACGCCGGG
GCCTAGCAAACACAGAAGTGGATGCTCACAGTCAGCTATTGGATGGATCA
CAGCGCCCCCAATGGAGGAGCTAGAGAAAATACCCAAGGAGCTAAAGGGA
TCTGCAACCCTATAGGTGGAACAACATTATGAACTAACCAGTACCCCGGA
GCTCTGGACTCTAGCTGCATATGTATCAAAAGATGGCTTAGTCGGTCATC
ACTAGAAAGAGAGGCCCATTGGACACGCAAACTTTATATGCCCCAGTACA
GGGGAACGCCAGGGCCAAAAAGGGGGAGTGGGTGGGGTAGGGGGGNNNNN
NNNNNNNNNNNNNNNNGNNNNNGNGNNNNNNNNNNNNNNNNNGNNGNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGNTNNNNNNNNNNNT

NNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXATTGACTACTATATTTCACAC
AGAGCTTGCTATATACAACATATATGTTCCTTTGAGCTGCCAGACTTATG
TACAAATTTAATGTAGAGAAAGTTTTCCTGAGTTTCCTGGTACTAGGGAA
GAACACTTCATCAGGGAACATTTATTCAGATGTTGCTGGTTTTCTTGCTG
GAGACATAGATGGATTTAAAAAATTAGGAAAGTTCTGAGCATTGAATGTA
AAAAAAAAAATCAGAGAATCAGGACTGATTGTGCTTCTTTTTTTTTTTTT
TCCTAAAATCTAGAGGAATTTTAACACTATACTTTTTATTAATTTTTTTA
AAAGGTTTCCAAATGGTTACTTTGTTCATAGAAATTTTCTTTGCGTAACT
CACACTTTTTTTATTATTTTTTTAATTAGGTATTTTCTTCATTTACATTT
CCAATGCTACCCCGAAAGTCCCCCAAACCTTCCTCGCCAGCTCCCATTTC
TTGGCCCTGGCGTTCCCCTGTACTGGGGCATATAAAGTTTGCAAGACCAA
TGGGCCTCTCTTTCCACTGATGGGCAACTAGGTCATCTTCTGATACATAT
GCAGCTAGAGACATGAGCTCCGGGGTACTGGGTAAGTTATATTGTTGTTC
CACCTACAGGATTGGAACCCCCTTTACTTCCTTGAGGACTTTCTCCAACT
CC

Query= MSMg01no417_l11.g1 MSMg01no417_l11.g1 CHROMAT_FILE:
MSMg01no417_l11.g1 PHD_FILE: MSMg01no417_l11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:36:41 2005
         (500 letters)



>mm_chr9_3526931_3527833
          Length = 903

 Score =  915 bits (473), Expect = 0.0
 Identities = 496/507 (97%), Gaps = 9/507 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   attgactactatatttcacacagagcttgctatatacaacatatatgttcctttgagctg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attgactactatatttcacacagagcttgctatatacaacatatatgttcctttgagctg 260

                                                                       
Query: 61  ccagacttatgtacaaatttaatgtagagaaagttttcctgagtttcctggtactaggga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccagacttatgtacaaatttaatgtagagaaagttttcctgagtttcctggtactaggga 320

                                                                       
Query: 121 agaacacttcatcagggaacatttattcagatgttgctggttttcttgctggagacatag 180
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agaacactccatcagggaacatttattcagatgttgctggttttcttgctggagacatag 380

                                                                       
Query: 181 atggatttaaaaaattaggaaagttctgagcattgaatgtaaaaaaaaaaa-----tcag 235
           |||||||||||||||||||||||||||||||||||||||||||||||||||     ||||
Sbjct: 381 atggatttaaaaaattaggaaagttctgagcattgaatgtaaaaaaaaaaaaaaaatcag 440

                                                                       
Query: 236 agaatcaggactgattgtgcttcttttttttttttttcctaaaatctagaggaattttaa 295
           |||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||
Sbjct: 441 agaatcaggactgattgtgcttctttttttttttt--cctaaaatctagaggaattttaa 498

                                                                       
Query: 296 cactatactttttattaatttttttaaaaggtttccaaatggttactttgttcatagaaa 355
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 cactatactttttattaatttttttaaaaggtttccaaatggttactttgttcatagaaa 558

                                                                       
Query: 356 ttttctttgcgtaactcacacttttttt-attattttttt-aattaggtattttcttcat 413
           |||||||||| ||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct: 559 ttttctttgcataactcacacttttttttattattttttttaattaggtattttcttcat 618

                                                                       
Query: 414 ttacatttccaatgctaccccgaaagtcccccaaaccttcctcgccagctcccatttctt 473
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 ttacatttccaatgctaccccgaaagtcccccaaaccttcctcgccagctcccatttctt 678

                                      
Query: 474 ggccctggcgttcccctgtactggggc 500
           |||||||||||||||||||||||||||
Sbjct: 679 ggccctggcgttcccctgtactggggc 705


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 500
Length of database: 903
Length adjustment: 10
Effective length of query: 490
Effective length of database: 893
Effective search space:   437570
Effective search space used:   437570
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)