Query= MSMg01no417_p14.b1 MSMg01no417_p14.b1 CHROMAT_FILE:
MSMg01no417_p14.b1 PHD_FILE: MSMg01no417_p14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:37:02 2005
(510 letters)
>mm_chr9_54301321_54302228
Length = 908
Score = 928 bits (480), Expect = 0.0
Identities = 499/506 (98%), Gaps = 2/506 (0%)
Strand = Plus / Minus
Query: 5 gaattcatgtcatttacggccgctgtgagggcggagttcaggtagaaggtatttctaggt 64
|||| ||||||| |||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 708 gaatccatgtcagctacggccgctgtgagggcagagttcaggtagaaggtatttctaggt 649
Query: 65 attgatgctttacataaaggaatgggaggggagagttgagagtccacagaaaggggcaag 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 648 attgatgctttacataaaggaatgggaggggagagttgagagtccacagaaaggggcaag 589
Query: 125 gttgagcatggtcagctaccaaatgtttaaactgtcctttacacctgcatttgtggttct 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 588 gttgagcatggtcagctaccaaatgtttaaactgtcctttacacctgcatttgtggttct 529
Query: 185 cactatttctctttgatattgctacaatgattgttattttacttatattatccttttgat 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 528 cactatttctctttgatattgctacaatgattgttattttacttatattatccttttgat 469
Query: 245 cgttttttccccccacactgagtttttgaggcaagatcttgaatgtaccccaggttggtt 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 468 cgttttttccccccacactgagtttttgaggcaagatcttgaatgtaccccaggttggtt 409
Query: 305 ttgaatctataattatctgcctttggagttctagcaacatagataagtggatatcatcat 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 408 ttgaatctataattatctgcctttggagttctagcaacatagataagtggatatcatcat 349
Query: 365 gctcagtttggtcttaagcctttatcacagtctaagaatgtcctggaacttattttaact 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 348 gctcagtttggtcttaagcctttatcacagtctaagaatgtcctggaacttattttaact 289
Query: 425 tactttttaaaatgttggtggttttagtttgtttgttttttttttttttacaaaaatttt 484
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 288 tactttttaaaatgttggtggttttagtttgtttg--ttttttttttttacaaaaatttt 231
Query: 485 aaccttttaaaagaaggttttcttga 510
|||||||||||||||| |||||||||
Sbjct: 230 aaccttttaaaagaagcttttcttga 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 510
Length of database: 908
Length adjustment: 10
Effective length of query: 500
Effective length of database: 898
Effective search space: 449000
Effective search space used: 449000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no417_p14.g1 MSMg01no417_p14.g1 CHROMAT_FILE:
MSMg01no417_p14.g1 PHD_FILE: MSMg01no417_p14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:37:02 2005
(542 letters)
>mm_chr9_54097713_54098655
Length = 943
Score = 1004 bits (519), Expect = 0.0
Identities = 537/543 (98%), Gaps = 1/543 (0%)
Strand = Plus / Plus
Query: 1 tgcttctgaaggatacgttctcctgtcgggggactgaagcaggacagggcgagcagagcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgcttctgaaggatacgttctcctgtcgggggactgaagcaggacagggcgagcagagcc 260
Query: 61 ttggtttctgttgttctttcttgatggaagatatcagaattattcaggctagtcccaagg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttggtttctgttgttctttcttgatggaagatatcagaattattcaggctagtcccaagg 320
Query: 121 agcataatgatgattttttt-ccatctcaatccccatgttcaggggtgctcagaggggca 179
| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aacataatgatgattttttttccatctcaatccccatgttcaggggtgctcagaggggca 380
Query: 180 agaggccatcaatcgtgcaacagaagtacaggaagataatgggtaataacagccttgcag 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agaggccatcaatcgtgcaacagaagtacaggaagataatgggtaataacagccttgcag 440
Query: 240 catagacttctctctaacaaaggtgaactccagagcttgaccccaccaaccagcatctgt 299
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 catagactcctctctaacaaaggtgaactccagagcttgaccccaccaaccagcatctgt 500
Query: 300 atttccttttcagataaatacagaacttctgaaaatcaattcataagccaagaaaaggag 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atttccttttcagataaatacagaacttctgaaaatcaattcataagccaagaaaaggag 560
Query: 360 gagacctctcttcatgattaaaatgccaagtggggaagatggacagttaaaggaataggg 419
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 561 gagacctctcttcatgattaaaatgccaagtggggaagacggacagttaaaggaataggg 620
Query: 420 caaatgttagggggaagaccatcagaaaagagaccggtagcgaggcagaagcaatgctag 479
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 caaatgttagggggaagattatcagaaaagagaccggtagcgaggcagaagcaatgctag 680
Query: 480 cttctacctgttctggtatgttctgtgcatcaatgagcagggtttttgcaaacattttca 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 cttctacctgttctggtatgttctgtgcatcaatgagcagggtttttgcaaacattttca 740
Query: 540 tct 542
|||
Sbjct: 741 tct 743
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 542
Length of database: 943
Length adjustment: 10
Effective length of query: 532
Effective length of database: 933
Effective search space: 496356
Effective search space used: 496356
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
