Query= MSMg01no418_b16.b1 MSMg01no418_b16.b1 CHROMAT_FILE:
MSMg01no418_b16.b1 PHD_FILE: MSMg01no418_b16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:37:13 2005
(545 letters)
>mm_chr9_29923950_29924894
Length = 945
Score = 1015 bits (525), Expect = 0.0
Identities = 540/545 (99%)
Strand = Plus / Plus
Query: 1 ataagacacttttcagacaggctcagttagaattttgtggcaatattctactgagggaca 60
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ataagacactttttagacaggctcagttagaattttgtggcaatattctactgagggaca 260
Query: 61 tgttctctgagactatgtctttctcggtgattcaaggtaactcatgagatatcttcatca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgttctctgagactatgtctttctcggtgattcaaggtaactcatgagatatcttcatca 320
Query: 121 ctacccaaaatcttgtttattgtctggtgtttgttaggcaatcaatggatattacaatgc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctacccaaaatcttgtttattgtctggtgtttgttaggcaatcaatggatattacaatgc 380
Query: 181 tattcaagcttgagccttatcccaaattacttaggaactctgtctatgactgcctaaagg 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 381 tattcaagcttgagccttatcccaaattacttaggaactctgtctatgactgcccaaaga 440
Query: 241 atccagggagttagaattactaggactgaacggtataggctactaggctcttgcatgagt 300
|||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||
Sbjct: 441 atccagggagttagaattactaggactgaatggtatagactactaggctcttgcatgagt 500
Query: 301 tatttttctctttgctgtgattaaatacttgacaaaagcattttaagaaataaaggctta 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tatttttctctttgctgtgattaaatacttgacaaaagcattttaagaaataaaggctta 560
Query: 361 tttaggcttatagttttaagaggagccaacctatcatggtggcaaagccatggaagtggc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tttaggcttatagttttaagaggagccaacctatcatggtggcaaagccatggaagtggc 620
Query: 421 agaataaggtagctggtcatattgcttccacagtcaagaaggagaggataaggatgggtt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 agaataaggtagctggtcatattgcttccacagtcaagaaggagaggataaggatgggtt 680
Query: 481 gcaacctcaagtccgagcccggtgacccacttctaatgagactcagccttctaaagttcc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gcaacctcaagtccgagcccggtgacccacttctaatgagactcagccttctaaagttcc 740
Query: 541 tgtag 545
|||||
Sbjct: 741 tgtag 745
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 545
Length of database: 945
Length adjustment: 10
Effective length of query: 535
Effective length of database: 935
Effective search space: 500225
Effective search space used: 500225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no418_b16.g1 MSMg01no418_b16.g1 CHROMAT_FILE:
MSMg01no418_b16.g1 PHD_FILE: MSMg01no418_b16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:37:13 2005
(497 letters)
>mm_chr9_30087085_30087979
Length = 895
Score = 862 bits (446), Expect = 0.0
Identities = 485/498 (97%), Gaps = 6/498 (1%)
Strand = Plus / Minus
Query: 1 tggaacctaagtagcttttgttttccttagctccaaatctttcccagaccaagctcttgt 60
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 694 tggaacctaagtagcatttgttttccttagctccaaatctttcccagaccaagctcttgt 635
Query: 61 tcccctaatcccctccccc-tcacaccttctccttctcttccttgacagaggctctggcc 119
||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 634 tcccccaatcccctcccccttcacaccttctccttctcttccttgacagaggctctggcc 575
Query: 120 accctggtgagatatgcggaaactcatcttccctgaaggcagagtcttttctatagtctt 179
|||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct: 574 accctggtgagatatgcggaaactcatctttcctgagggcagagtcttttctatagtctt 515
Query: 180 tctgtggtatctgccttccatctggatctctcccagccatttgttgagcttctcttggct 239
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 514 tctgtggtgtctgccttccatctggatctctcccagccatttgttgagcttctcttggct 455
Query: 240 tgagaaataatatggcctcctgaaaactaagctatttctattccacagtaccttttttct 299
||||||| |||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct: 454 tgagaaa-aatatggcctcctgaaaactaagctatttctattccgcagta-cttttttc- 398
Query: 300 ttttttttaaatttcagtaccctttgtattcctcatgtccctattattgtgtatgactgg 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 ttttttttaaatttcagtaccctttgtattcctcatgtccctattattgtgtatgactgg 338
Query: 360 tctttgtttgtggtttttttggtttatctgtttt-tttttaatgttttaccagacaactc 418
||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 337 tctttgtttgtgg-ttttttggtttatctgttttgtttttaatgttttaccagacaactc 279
Query: 419 ttcatctctgcttcatcatctgaagatagtagacacagtgatggtcagaccatgcgtcta 478
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 278 ttcatctctgcttcatcatctgaagatagtagacacagcgatggtcagaccatgcgtcta 219
Query: 479 ttctcatagcatctgatg 496
||||||||||||||||||
Sbjct: 218 ttctcatagcatctgatg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 497
Length of database: 895
Length adjustment: 10
Effective length of query: 487
Effective length of database: 885
Effective search space: 430995
Effective search space used: 430995
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
