Query= MSMg01no418_e06.b1 MSMg01no418_e06.b1 CHROMAT_FILE:
MSMg01no418_e06.b1 PHD_FILE: MSMg01no418_e06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:37:25 2005
(524 letters)
>mm_chr9_49055312_49056237
Length = 926
Score = 903 bits (467), Expect = 0.0
Identities = 509/525 (96%), Gaps = 8/525 (1%)
Strand = Plus / Minus
Query: 5 gaattcctggg--tttcgcatgtcccagcccagggaagagcagaacagacaatcttccct 62
||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 726 gaattcctgggcatt--gcatgtcccagcccagggaagagcagaacagacaatcttccct 669
Query: 63 tggcctggttgctctaacaattggtcattaaaaggctgaacggcaagttttcccagctgc 122
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 668 tggcctggttgctctaacaattggtcattaaaaggctgaaaggcaagttttcccagctgc 609
Query: 123 agactcagagcctcaggcccccatacccattacacaaatcacagaaagagagcaaacagc 182
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 608 agactcagagcctcaggccctcatacccattacacaaatcacagaaagagagcaaacagc 549
Query: 183 agataccaggaagtctccctgagtaattcctgggacagagggtactagaaaaagcctaat 242
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 548 agataccaggaagtctccctgagtaattcctgggacagagggtactagagaaagcctaat 489
Query: 243 gacaggcctctgtgaagctcaatatcacatgcctgagcctgcctgaggtgctgcaagata 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 gacaggcctctgtgaagctcaatatcacatgcctgagcctgcctgaggtgctgcaagata 429
Query: 303 ttt--tgtcatctttgaacaaccctgagagagcatcatcagagatctacccaggtcccat 360
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 ttttctgtcatctttgaacaaccctgagagagcatcatcagagatctacccaggtcccat 369
Query: 361 gggccctccttcatctccaggcccaacaga-gacaagagtcgagtgctccgccatcatta 419
||||||||||||||||||||||||| || | ||||||||||||||||||| |||||||||
Sbjct: 368 gggccctccttcatctccaggcccagca-acgacaagagtcgagtgctccaccatcatta 310
Query: 420 cctcaaccttcctgggccttccttctgaagctcatgggaatccactaacagaccctggaa 479
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 309 cctcaaccttcctgggccttccttctgaagctcacaggaatccactaacagaccctggaa 250
Query: 480 gagaacagctgacccattatgatctgttgattgaaaggaaaaaca 524
||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 249 gagaacagctgacccattaggatctgttgattgaaaggaaaaaca 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 524
Length of database: 926
Length adjustment: 10
Effective length of query: 514
Effective length of database: 916
Effective search space: 470824
Effective search space used: 470824
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no418_e06.g1 MSMg01no418_e06.g1 CHROMAT_FILE:
MSMg01no418_e06.g1 PHD_FILE: MSMg01no418_e06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:37:25 2005
(403 letters)
>mm_chr9_48888951_48889752
Length = 802
Score = 748 bits (387), Expect = 0.0
Identities = 399/403 (99%), Gaps = 1/403 (0%)
Strand = Plus / Plus
Query: 1 acaatttgaggtggcattcttttctcagtaattgaaagaatgagctaagggagggagctg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acaatttgaggtggcattcttttctcagtaattgaaagaatgagctaagggagggagctg 260
Query: 61 aaatcgatacattgcaggaccattccggaacagatttcttttgttcatagaggctgttcc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaatcgatacattgcaggaccattccggaacagatttcttttgttcatagaggctgttcc 320
Query: 121 ttgttgtctgacagagacagcagtttggaggtgggaggcaccgagtctcctcattccttt 180
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 t-gttgtctgacagagacagcagtttggaggtgggaggcaccgagtctcctcattccttt 379
Query: 181 cacagttaaatagaaaacctcatctgtagtttctcagttgcgtaagctgagccttggggg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 cacagttaaatagaaaacctcatctgtagtttctcagttgcgtaagctgagccttggggg 439
Query: 241 acgagttcccctgaagtgagcagtctgtaagccaggacagtgcaggcacttagcctcacc 300
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 acaagttcccctgaagtgagcagtctgtaagccaggacagtgcaggcacttagcctcacc 499
Query: 301 ggccagtgtcactggtaagtgtttttaatttgcttagagatgaatcatctgattggacac 360
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 500 agccagtgtcactggtaagtgtttttagtttgcttagagatgaatcatctgattggacac 559
Query: 361 atgggaactgtggtctaggggctcatactcagtcttggaagat 403
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 atgggaactgtggtctaggggctcatactcagtcttggaagat 602
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 403
Length of database: 802
Length adjustment: 9
Effective length of query: 394
Effective length of database: 793
Effective search space: 312442
Effective search space used: 312442
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
