BAC Information

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BAC

Clone NameMSMg01-418O04
Chromosome9 (Build37)
Map Location 18,778,939 - 18,779,351
singlet/doubletsinglet
Overlap genenone
Upstream geneEG665548, LOC665554, LOC665567, Chordc1, Naalad2, B020006M18Rik, Map1lc3-ps, Mbd3l2, Zfp558, Mbd3l1, Muc16, Olfr24, Olfr828, Olfr829, Olfr830, Olfr831-ps1, Olfr832, GA_x5J8B7W6RL5-13870817-13871726
Downstream geneOlfr834, Olfr835, Olfr836, Olfr837, GA_x5J8B7W6RL5-13695863-13696754, Olfr839-ps1, GA_x5J8B7W6RL5-13645512-13646298, Olfr841-ps1, Olfr842-ps1, Olfr843, Olfr845, Olfr1522-ps1, Olfr846, LOC665697, Olfr847, GA_x5J8B7W6RL5-13451244-13452122, Olfr849, Olfr850, Olfr851, Olfr852-ps1, Olfr853, Olfr854, Olfr855, Zfp75, EG624341, LOC665751, Olfr857, Olfr858-ps1, Olfr58, Olfr859, Olfr860, GA_x5J8B7W6RL5-13004417-13003354, Olfr862, Olfr77, EG665823, Olfr863-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-418O04.T7 (MSMg01no418_o04.b1)MSMg01-418O04.TJ (MSMg01no418_o04.g1)
ACCAG514116AG514117
length873824
length of high quality
(start - end)		124 (72 - 195)513 (152 - 664)
definitionCHROMAT_FILE: MSMg01no418_o04.b1 PHD_FILE: MSMg01no418_o04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:38:12 2005CHROMAT_FILE: MSMg01no418_o04.g1 PHD_FILE: MSMg01no418_o04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:38:12 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
TGCGATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCTGGTATTCCTCCACTCTCTTACCCTGTTTCTTCTTATTTG
GGCACTGAGTCCACTAATATTGAGATATATTAATGAACAGTGATTGCCAT
TTCGTATTATTTTGATGTTGGTGTTTTTGTGTGTGTGGGGGGGAGGCTCT
CTCACTTCTTCTCCCCCTCTCCTTTTTCTCTCCTCTCTTTCCCTCCCCAC
TGTTCCTCTATCCGTCTTCTTTGTTTCTTCTCCTTCCTCCTTCCCTCTCC
ATATCTTCTTTTCCTCCTCTCTCTTTTTTTTTTTCTTCCCCCCTCCCCCT
TCCCTCTCTTTCCCTTCCCCTCTTTTTCCCTCCCTCCCCCCCCTCCCTTT
ATCCCTACCTTTTCTTCTCTCCCTTTCTCTCCCCCCCCCCCCTCCCTTTC
TTTAACCCCTTCCCCTCCTTCCCATTCTCTCCCCCCCTCTCTCTCCTCTT
TTCCCCTCCCTTCCCTCCTTTCCCTTTCCCTCCTCCCCTTTCTCCCCTTT
TTTCTTTCCTCCCTTCTCTCTTTTCCCCCCCCTTTTCCTCCCCCCCTCCT
CCCTACTCCCCCTTTCTTCCCTTTTCCCCTTCGCCTTTCTATTCTCATCC
TCCCCTTTTCCCCTACTCTCCCTCCTTCTCCCCCCCTCCTTGTTCCGTTC
TTTCCCCTTATCGTCCCTCTTTCCCTTCCTTATCCCTCCTTTATCCCTTT
TTCCCCTTTCACTCCCCTTTCCCCCCTTCCCCTTTCCTTTTTTTTTTTCC
TACTCTATTCTTTTTTCTCCCCCCCCTATTTCCCTTTTATCCCCTTTTTC
CCCCCTCTCTTCCCTCTTCTTTT

GGGATGGGATGGAGAAGGAGAGAGGGGTAGGTAGGGGGGGGAGAGGGGGG
CGGCGGGGNNNNGGAGAAGGAACNNCACGATGATAXXXXXXXXXXXXXXX
XXXXXXXXXTTCAAAAAGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXGGG
CATTCTTCAACTTGTCAAGGAAAAAAATTAGACGAGGAGGTGAGAAAAGA
GGAGAAGTGAGGAAATGAGAAGTTAGATGAGAAGAGGAAAGACGGGACAG
AAATAAAAAAGAGAAAAGGCAGGAGAAGACATTAGAAGAGAAAATAAAAC
TACCAAAAATGAGAAGGAGTGAAAGGAACAGAGGAGTAGGACATGGCAGG
GAGGGAGCAAGGAGAAGATGGGAGAGAAGAGAAGAGAGAAGTAGAAAAAA
AAAGATTAAAAAGGGAGAATTGTAACAGAAGAAAATAAATAAAACAGAAA
CCTCCATTTCTCATGTATTTACTGTGGAAAGCTTCAGATTACCTTCAATA
TAAAATGAAGAGTTGTATACTTCTATACTGGATATTGCTGAATAAAGGTT
GAAAATGTAATCCCAGGAAAGATAGATTGACTACAGAGAAAACAAGTTTC
TTAACCAGGAATTGCATGTCTGGGTATAAAATCAAATGTGCTTCTCCTGT
ACTGTACATTGTTATGTTATAAAGCAGACACATGTCCACTATTTGCAGTA
TTGGTGGCCCTTAAGGTTCAATTACCTAACTCCTCATTATCCATATTTGA
AATTGTTTTATCTTCCCAAGGCAACTTCAATCCTTAAGGGAATAAATTAA
CAGAAATAGGAAAATCTGTCGGAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no418_o04.g1 MSMg01no418_o04.g1 CHROMAT_FILE:
MSMg01no418_o04.g1 PHD_FILE: MSMg01no418_o04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:38:12 2005
         (513 letters)



>mm_chr9_18778441_18779353
          Length = 913

 Score =  760 bits (393), Expect = 0.0
 Identities = 408/413 (98%)
 Strand = Plus / Minus

                                                                       
Query: 101 aataaaaaagagaaaaggcaggagaagacattagaagagaaaataaaactaccaaaaatg 160
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 911 aataaaaaagagaaaaggcaggagaagacattagaagggaaaataaaactaccaaaaatg 852

                                                                       
Query: 161 agaaggagtgaaaggaacagaggagtaggacatggcagggagggagcaaggagaagatgg 220
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 851 agaaggagtgaaaggaacagaggagtaggacatggcaaggagggagcaaggagaagatgg 792

                                                                       
Query: 221 gagagaagagaagagagaagtagaaaaaaaaagattaaaaagggagaattgtaacagaag 280
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 791 gagaggagagaagagagaagtagaaaaaaaaagattaaaaagggagaattgtaacagaag 732

                                                                       
Query: 281 aaaataaataaaacagaaacctccatttctcatgtatttactgtggaaagcttcagatta 340
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 731 aaaataaataaaacagaaacctccatttctcatgtatttactatggaaagcttcagatta 672

                                                                       
Query: 341 ccttcaatataaaatgaagagttgtatacttctatactggatattgctgaataaaggttg 400
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 671 ccttcaatataaaatgaagagttgtatacttctatactggatattgctgaataaaggttg 612

                                                                       
Query: 401 aaaatgtaatcccaggaaagatagattgactacagagaaaacaagtttcttaaccaggaa 460
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 611 aaaatgtaatcccaggaaacatagattgactacagagaaaacaagtttcttaaccaggaa 552

                                                                
Query: 461 ttgcatgtctgggtataaaatcaaatgtgcttctcctgtactgtacattgtta 513
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 ttgcatgtctgggtataaaatcaaatgtgcttctcctgtactgtacattgtta 499


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 513
Length of database: 913
Length adjustment: 10
Effective length of query: 503
Effective length of database: 903
Effective search space:   454209
Effective search space used:   454209
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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