BAC Information

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BAC

Clone NameMSMg01-418P01
Chromosome9 (Build37)
Map Location 42,554,402 - 42,554,826
singlet/doubletsinglet
Overlap geneGrik4
Upstream gene6720432D03Rik, Sorl1, Sc5d, Tecta, Tbcel
Downstream geneArhgef12, LOC545339, Tmem136, Pou2f3, LOC628726, Oaf, D630033O11Rik, Trim29, LOC384931, Pvrl1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-418P01.T7 (MSMg01no418_p01.b1)MSMg01-418P01.TJ (MSMg01no418_p01.g1)
ACCAG514158AG514159
length876749
length of high quality
(start - end)		---419 (75 - 493)
definitionCHROMAT_FILE: MSMg01no418_p01.b1 PHD_FILE: MSMg01no418_p01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:38:17 2005CHROMAT_FILE: MSMg01no418_p01.g1 PHD_FILE: MSMg01no418_p01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:38:17 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NTTTCCCATTGGTCCCTACTGTCACCNNNNNANGANNNCNCTATACCCGG
AGAGGATNNCCGCGGAATTTCCCAATATTGTCAAAAAAAGAANGATTAAT
GGGNTTTGTGTTGACTAACGGCATGCAGCGCTATGTTCCCTGTTTTTGCT
CGAACAAGAGCTCTGCTCTAATACGCCATGTCGACCTTCAGACTTAGAAT
ATTCTTAAGTACATTATAATATTTCTGTACTCTAGATGACTCATCTCACC
TACTGTCACAGATGGTACTGGACCGGCTGTCTAAACATCCTTTACATTAA
GCCTCGTACGGATTTTGTCCCTAATTGTCTCTCCGTAGACTAGTTTTTTA
CTCATGTTTCAGATATAGCTTTCATGCTGATCCATCTTCTCTGTGCTATC
TGCTAGCCATTCCCTTTATTTCCCTTGCTCACCTATATCTTACATTCTTC
TATTCTTCACTTCTACACGAAACAGTTTTCCCCTCTCTATCAGTTAGACG
CCTCTAGCGCGTGATCGTCCTAATTACTCCATAAGCGCATTTTTTTTCTC
TCAGACTCCCTTTCCTATCGATCCCCCCTACCGTTACCGGCGCTATATAT
TCTCTCCTGACCCTTGTGCTTCCTTTTCTTAGCTCCTTCTCCCGGCTTTC
TGCTCTTCCCTTCCCTGTTCCTCTCTTCTTCTTCCCCTGTCACCTTCTAC
TCTAACCTATAATCCCCCCCCCTCCTTTTTTACCATTTCTTCGTACTATC
CTAGTTAGCGTTTATTTACCGCGCTATCGTACGCCTATTATTATTACCTA
CGCCTCTCATTTTATCTATTACCTATACCCCTCCTCGCTCTTTTCTCCCC
CTACTCTATCCCCCTCTTTTCCCTTA

CCTATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCAGTGTGGACGCTCATGCTGACATGG
TTGTGTAAGAGTGAAATATAATTGCAGATGCATTTACAAGCTATTTCCCC
AGGTTTGGATGAGTTCTAAGATAAACATGGTAACAGGTATCTTTGGGATA
CCCTGGCAGCCGTCTCCAAATCTGACTTGATGGCAAAAAAAAAAAAAAAA
AAAGGCAGAGTTGTAAGGGTCTAGGAGAAAAACATTCCTACCACATGGAC
AAATATCCAGAGACCCGGACTATTGGGGCATCTGTAGGGATAAAAAAGAG
AAGATTTGATGTTGGTGACATACTGAAGACAGGAGGGTGGAGGGAGACTG
AATCAGGGTGGGGAGTGTGGTACATATCCAGGGGCTTTAGGCCATGGGTG
GGGTGAGAATGTTGTTGTGATGAGAGGCTTTGGGACATGAAGAACGTGTA
GATGGTGCATAACGGTATCAATCTGGCTGAGCTGCTCTGGAGCATAGTGC
AAGAGACGGATCAGACAGTTTACTCTGAAGTTATCAGGGAAGCGGAGTAT
GATGGACGTGTCCTCCCTGTGTAGGCGGTGTACCCTTCCGGTGACTCCCG
ACCTGTATTGTTTTTTGCAGGATGTTTTTTTTGCCTCCTCCTCTTTCTTT
TTTTTTATAAGTTTTTCTCATTCCTCCTTCCCTTTCCCCCTCCCTCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no418_p01.g1 MSMg01no418_p01.g1 CHROMAT_FILE:
MSMg01no418_p01.g1 PHD_FILE: MSMg01no418_p01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:38:17 2005
         (419 letters)



>mm_chr9_42554202_42555026
          Length = 825

 Score =  690 bits (357), Expect = 0.0
 Identities = 406/425 (95%), Gaps = 6/425 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   cagtgtggacgctcatgctgacatggttgtgtaagagtgaaatataattgcagatgcatt 60
           |||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct: 625 cagtgtggacgctcatgctgacatggttgtgtaagagtaaaatataactgcagatgcatt 566

                                                                       
Query: 61  tacaagctatttccccaggtttggatgagttctaagataaacatggtaacaggtatcttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tacaagctatttccccaggtttggatgagttctaagataaacatggtaacaggtatcttt 506

                                                                       
Query: 121 gggataccctggcagccgtctccaaatctgacttgatggcaaaaaaaaaaaaaaaaaaa- 179
           || |||||||||||||| |||||||||||||||| |||||||||||||||||||||||| 
Sbjct: 505 ggaataccctggcagccctctccaaatctgacttaatggcaaaaaaaaaaaaaaaaaaaa 446

                                                                       
Query: 180 ----ggcagagttgtaagggtctaggagaaaaacattcctaccacatggacaaatatcca 235
               ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 445 aaaaggcagagttgtaagggtctaggagaaaaacattcccaccacatggacaaatatcca 386

                                                                       
Query: 236 gagacccggactattggggcatctgtagggataaaaaa-gagaagatttgatgttggtga 294
           |||||  ||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 385 gagactgggactattggggcatctgtagggataaaaaaagagaagatttgatgttggtga 326

                                                                       
Query: 295 catactgaagacaggagggtggagggagactgaatcagggtggggagtgtggtacatatc 354
           |||||||||| ||||||||||||||||||||||||||| |  | ||||||||||||||||
Sbjct: 325 catactgaaggcaggagggtggagggagactgaatcagagcagagagtgtggtacatatc 266

                                                                       
Query: 355 caggggctttaggccatgggtggggtgagaatgttgttgtgatgagaggctttgggacat 414
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 caggggctttaggccatgggtggggtgagaatgttgttgtgatgagaggctttgggacat 206

                
Query: 415 gaaga 419
           |||||
Sbjct: 205 gaaga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 5
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 419
Length of database: 825
Length adjustment: 9
Effective length of query: 410
Effective length of database: 816
Effective search space:   334560
Effective search space used:   334560
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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