BAC Information

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BAC

Clone NameMSMg01-419B10
Chromosome9 (Build37)
Map Location 83,565,961 - 83,566,324
singlet/doubletsinglet
Overlap genenone
Upstream geneIrak1bp1, Phip, LOC100039144, Hmgn3, LOC100039159, 4930431B11Rik, EG619900, LOC100039186, LOC100039200, Sh3bgrl2
Downstream geneLOC100039222, Elovl4, Ttk, EG546150, Bckdhb, EG666669
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-419B10.T7 (MSMg01no419_b10.b1)MSMg01-419B10.TJ (MSMg01no419_b10.g1)
ACCAG514272AG514273
length770762
length of high quality
(start - end)
88 (244 - 331)451 (71 - 521)
definitionCHROMAT_FILE: MSMg01no419_b10.b1 PHD_FILE: MSMg01no419_b10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:38:29 2005CHROMAT_FILE: MSMg01no419_b10.g1 PHD_FILE: MSMg01no419_b10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:38:29 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTTTCTCTTTAATCTGCGGCGCTCATAGAATCACTCACTCCAGAGGATCG
CGGAAATCTGGGGTATTTTCTAGGGCAGAGAAATGCTATGACCCCCAGAG
ATGGGTTGAGATGTCGGGNTGGTGCCGTCGGTCTCAGCATGTTAAATAGA
CATGTGCCAAGAAGAAACCACCAGAAGAACTTAGATATCCTAATGGTAAA
GCTCAAACTTGGCCCCCAGGAACCTGGTGGCCCTAATCAGCAGGAAGTAA
TCTAATGATAATGTCACCCCCTTTACCCTGGTAATATTTTTTTTTTAAAT
TTCCCTTCTATCTGGTGTTAATGTTTGCAAGGGTGGAAAAATGATAGAGA
AGGGTGGAATATCAAAGAATTCCCATCCTAGCCAAAGATCAGTTAAAGTC
CTCTATGAGTTCAAGACCCAACTAATCCATCTAAGCTCCCAGGCTACCCA
CTGAGATCTTTCCTTTATCCCCCCCCTTTTTTTTCATTCCCCTCTCCCCT
TTTTTTCCCTTTAACTTCGTATTCCCCGCTTTTTTCTCCCCCCCCTGCGA
TGGTTCCCCTTTTTTTTCCTTTCCTCTCTACTTCCTCATTCCCCCCATTT
TTTTCCCCCCCCCTTTCTTTTTTTTTTTTCTCCCCTTTTTTATCCTCTCC
CCTCTTCTCTCTTTTATTTCCGCTTCCACATCCTTGCTCCCAAATTTTTC
TTTTTTCTACCCCCCCCCCCCCCTTTTTTTCCCCTCTCCCCACTCTATTT
CCATCTTTATTTCCACCTTT
CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTAGAAAATTATGCAAATTTAAGATATCATT
CAGTACATATTAAAAATATTGTAATATTCTTGGCTGGTCTGGATTTCATG
ATCTCTTTGCCACAGTCTCCTGGTTGATGGGATTATAAGCATTCACAACT
ATGCTTGACTTTTGTGTTTGTTTGATGAGATGTGGTCTTAGACTTTAGCT
GGCTTTTGTGTTTGTTTGATGAGATGTAGTCTTACACTGTAGCTGGGGCT
AGGGTTAAATTTAGAACTCACTATGCAACCCAGGCTGGTCTCAAATTCAT
GGTTTTCTTTTGTCTGTGCCTCTCAAGAGGCAAGAACCATTAAACCTGGA
TTTAAAGGTTTTTTTTTCTCTCTCTCTCTCTCTTAAGATTTTGTTAATTG
TAAATGTAAATAGCATAATTTCTGGAAACCAGTACAGGTCATTTGTAGAT
GTCGGAACATATTTACTTAGCTTCGCCACACCTTGGAAGTATAAAATGGT
GGTCTCCTGCCAAGGGAAACCTATGCTTTAAATTTGCAGATGTAAAGAGG
GTAGCTTTCCATATGTCCCCTGGACACCCAGCACCTTTTCCTGAAAGATG
CGCCCCCCTAAAATCTCTTCCACTCCCCAGAAATCTTCTTTGGTCTTATT
TGTATTGCTGTCTCCCTTGTACCTGTTTTTTGTATCCCCTTTGGGTACTA
ATTGGGATCTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no419_b10.g1 MSMg01no419_b10.g1 CHROMAT_FILE:
MSMg01no419_b10.g1 PHD_FILE: MSMg01no419_b10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:38:29 2005
         (451 letters)



>mm_chr9_83565940_83566790
          Length = 851

 Score =  634 bits (328), Expect = 0.0
 Identities = 355/364 (97%), Gaps = 1/364 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tagaaaattatgcaaatttaagatatcattcagtacatattaaaaatattgtaatattct 60
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tagaaaattatgcatatttaagatatcattcagtacatattaaaaatattgtaatattct 326

                                                                       
Query: 61  tggctggtctggatttcatgatctctttgccacagtctcctggttgatgggattataagc 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct: 325 tggctggtctggatttcatgatctctttgccacagtctcctggttgatgggactacaagc 266

                                                                       
Query: 121 attcacaactatgcttgacttttgtgtttgtttgatgagatgtggtcttagactttagct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 attcacaactatgcttgacttttgtgtttgtttgatgagatgtggtcttagactttagct 206

                                                                       
Query: 181 ggcttttgtgtttgtttgatgagatgtagtcttacactgtagctggggctagggttaaat 240
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 205 ggcttttgtgtttgtttgatgagatgtagtcttacactgtagttggggctagggttaaat 146

                                                                       
Query: 241 ttagaactcactatgcaacccaggctggtctcaaattcatggttttcttttgtctgtgcc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 145 ttagaactcactatgcaacccaggctggtctcaaattcatggttttcttctgtctgtgcc 86

                                                                       
Query: 301 tctcaagaggcaagaaccattaaacctggatttaaaggtttt-tttttctctctctctct 359
           | |||||||||||||||||||||||||||||||||||||||| | | |||||||||||||
Sbjct: 85  tttcaagaggcaagaaccattaaacctggatttaaaggttttctctctctctctctctct 26

               
Query: 360 ctct 363
           ||||
Sbjct: 25  ctct 22


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 451
Length of database: 851
Length adjustment: 10
Effective length of query: 441
Effective length of database: 841
Effective search space:   370881
Effective search space used:   370881
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)