BAC Information

Click to search

BAC

Clone NameMSMg01-420K19
Chromosome9 (Build37)
Map Location 20,576,264 - 20,576,852
singlet/doubletsinglet
Overlap geneCol5a3
Upstream geneOlfr58, Olfr859, Olfr860, GA_x5J8B7W6RL5-13004417-13003354, Olfr862, Olfr77, EG665823, Olfr863-ps1, Olfr864-ps1, Olfr865-ps1, Olfr866, Olfr867, Olfr868, Olfr869, Olfr870, Olfr871, Olfr872, Olfr39, Olfr873, Olfr18, Zfp560, 4921534A09Rik, EG624824, Zfp26, Zfp426, 5730601F06Rik, 7030419G21Rik, LOC100041205, 2210010B09Rik, 5730577I03Rik, Fbxl12, Ubl5, Pin1, Olfm2
Downstream geneRdh8, A230050P20Rik, Angptl6, Ppan, Eif3s4, Dnmt1, Edg5, Mrpl4, Icam1, Icam4, Icam5, Glp1, B230118G17Rik, Raver1, Tyk2, Cdc37, Pde4a, Keap1, Edg8, Atg4d, BC021438, Cdkn2d, Ap1m2, Slc44a2, Ilf3, Qtrt1, Dnm2, Tmed1, AB124611, Carm1, Yipf2, 1810026J23Rik, EG666043, Smarca4, Ldlr, Spc24, Ankrd25
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-420K19.T7 (MSMg01no420_k19.b1)MSMg01-420K19.TJ (MSMg01no420_k19.g1)
ACCAG515485AG515486
length785755
length of high quality
(start - end)		296 (366 - 661)589 (62 - 650)
definitionCHROMAT_FILE: MSMg01no420_k19.b1 PHD_FILE: MSMg01no420_k19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:40:36 2005CHROMAT_FILE: MSMg01no420_k19.g1 PHD_FILE: MSMg01no420_k19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:40:36 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNNNNNNNNNCCCCCCTCCACAAACAAAACAACAACAAANANNGCACCA
AAATTGCGGGGNGAAGAGAANANCACATTCCCACCCGCCGGAANNNNNNN
GNGTTTCCNNCAGCCGGGAGNCNCNNGNGNNCNNNGNGAGNGAGGGNCNN
NNGAGCAACACTCNACCCNACAGGCNGANCNNGAACNNNACANNCNNACN
ANCNCAGCNNNGAAAGCANGGGNGGNACAGCNGNANACCACCCCAACNNA
ACNCCNAAAGAGAANNNNNNNNAGCAGAANNGANANGCANCAAAGAAAAG
AGGAAAGCAAGAAAGAACCCCCGAAAGAGGAGAAAGCCNCAAGGGNAGAA
NACNCAAGNNNCCATTTTTTTTAAAGACTTAATTATAAATTTAAAAGTTC
TTTTATGGGTATGGGCTTGTTTTGTGTTTAGTTTTGGGTTTTTGTTTGGT
TTGGTTTTGCCTGCATGTCTGTGTTCCACATGTTCAGTGTCCTTGGAGAC
CAGAAAAGGGCTCAGATCTCTTGGAAGTTATGGAAGGAAGGCTATGAGCT
GTGGGCACCCCAAACCAAATCCAGGTCCTTTGCAAGCAAAGCGCTTTTAC
TTGATGAACCCTCACTCTAGCTACCTATTTTTTTTAATTATATGTGAAGG
AGGGCGTCTGTGTATGAATGCAGGTGCCTGCAGAGCCAGAGCCGCCAAAT
CCCCTGTTGCTGGACCTACAGTTAGTTTAAGCCACCCAACATGGGTGATG
GGAACCAAACTGGGATGCTCTACATGCACAGTGAT

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXACTGAGCTTGGAGCTGCAGCAGTTGCAGAGACCTCTGGG
CACAGCCGAGAGCCCAGGCCTCATGTGTCGCGAGCTTCACCGCGACCACC
CACACCTGCCCGATGGTGAGGCCCAGGTCCTTCTGGGAAGGGCAGGTGAG
CACTGCAGCATTCCTGTGCACTGATTGCCTGGCTCTGCTTCGGTGGTAGG
AGAGTACTGGATTGACCCCAATCAGGGCTGTGCACGTGACGCCTTCAAGG
TTTTCTGCAACTTCACGGCAGGAGGTGAGACCTGTCTCTATCCAGACAAG
AAGTTTGAGACGGTGAGTGAAAGAAACCATCTTGTCTTTTTCCCACCTCT
GCCATCTTCTGCCATCTTTGAGCCCTTATTCTCCCTTCACATAACACCTG
TCCCTCCTGTCTGTCAGGTAATGTCTTATAGTACAGAACCTGAAGCCAAG
CCTTAAGGCAAGGGTGCTGCCCAGTATTCACAAGGCTATGGGCTTCACCC
GCAGTGCATGCACAGGGGTAGGGGTTGTGTGGGGTGGCTAGATCCCAGCC
TTAAGCCCCATTCCCTAGCAGCACTTGAGCGTGTGCAGGGCCCTGGGTTT
CATCCAGTCTCCACAGAGAATCCTGGGAGTTGCGGNCTGTGAGGTTGAAG
GAGCTGTGTACCCTTGTCAAGGCCCAGCCTGTGCCATCCATGAACCCCGA
TGTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no420_k19.g1 MSMg01no420_k19.g1 CHROMAT_FILE:
MSMg01no420_k19.g1 PHD_FILE: MSMg01no420_k19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:40:36 2005
         (589 letters)



>mm_chr9_20576064_20577052
          Length = 989

 Score = 1077 bits (557), Expect = 0.0
 Identities = 581/589 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   actgagcttggagctgcagcagttgcagagacctctgggcacagccgagagcccaggcct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 789 actgagcttggagctgcagcagttgcagagacctctgggcacagccgagagcccaggcct 730

                                                                       
Query: 61  catgtgtcgcgagcttcaccgcgaccacccacacctgcccgatggtgaggcccaggtcct 120
           |||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 729 catgtgccgagagcttcaccgcgaccacccacacctgcccgatggtgaggcccaggtcct 670

                                                                       
Query: 121 tctgggaagggcaggtgagcactgcagcattcctgtgcactgattgcctggctctgcttc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 669 tctgggaagggcaggtgagcactgcagcattcctgtgcactgattgcctggctctgcttc 610

                                                                       
Query: 181 ggtggtaggagagtactggattgaccccaatcagggctgtgcacgtgacgccttcaaggt 240
            ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 609 cgtgataggagagtactggattgaccccaatcagggctgtgcacgtgacgccttcaaggt 550

                                                                       
Query: 241 tttctgcaacttcacggcaggaggtgagacctgtctctatccagacaagaagtttgagac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 549 tttctgcaacttcacggcaggaggtgagacctgtctctatccagacaagaagtttgagac 490

                                                                       
Query: 301 ggtgagtgaaagaaaccatcttgtctttttcccacctctgccatcttctgccatctttga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 ggtgagtgaaagaaaccatcttgtctttttcccacctctgccatcttctgccatctttga 430

                                                                       
Query: 361 gcccttattctcccttcacataacacctgtccctcctgtctgtcaggtaatgtcttatag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 gcccttattctcccttcacataacacctgtccctcctgtctgtcaggtaatgtcttatag 370

                                                                       
Query: 421 tacagaacctgaagccaagccttaaggcaagggtgctgcccagtattcacaaggctatgg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 tacagaacctgaagccaagccttaaggcaagggtgctgcccagtattcacaaggctatgg 310

                                                                       
Query: 481 gcttcacccgcagtgcatgcacaggggtaggggttgtgtggggtggctagatcccagcct 540
           ||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||
Sbjct: 309 gcttcacccgcagtgcatgcacaggggtaggggtcatgtggggtggctagatcccagcct 250

                                                            
Query: 541 taagccccattccctagcagcacttgagcgtgtgcagggccctgggttt 589
            ||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 249 caagccccattccctagcagcacttgagcgtgggcagggccctgggttt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 589
Length of database: 989
Length adjustment: 10
Effective length of query: 579
Effective length of database: 979
Effective search space:   566841
Effective search space used:   566841
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |