BAC Information

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BAC

Clone NameMSMg01-421C21
Chromosome9 (Build37)
Map Location 39,127,445 - 39,127,822
singlet/doubletsinglet
Overlap genenone
Upstream geneOlfr25, Olfr898, Olfr899, Olfr900, Olfr147, Olfr901, Olfr902, Olfr903-ps1, Olfr904, Olfr905, Olfr906, Olfr907, Olfr908, Olfr909, Olfr910, Olfr912, Olfr913, Olfr914, Olfr915, Olfr916, Olfr917, Olfr918, GA_x5J8B7W60AJ-925630-926226, Olfr919, Loh11cr2a, Olfr920, Olfr921, Olfr922, Olfr923, Olfr924, Olfr26, Olfr925-ps1, Olfr926, GA_x5J8B7W60AJ-719102-719883, Olfr928-ps1, GA_x5J8B7W60AJ-703922-704828, Olfr930, GA_x5J8B7W60AJ-666029-666595, Olfr1545-ps1, Olfr932-ps1, Olfr933, Olfr934, Olfr935, Olfr146, EG628171, Olfr937, LOC667260, Olfr938, Olfr939-ps1, GA_x5J8B7W60AJ-540286-540740, Olfr941-ps1, Olfr27, Olfr942-ps1, Olfr943, Olfr944, Olfr144, Olfr945, GA_x5J8B7W60AJ-354484-355428, Olfr947-ps1, Olfr948
Downstream geneLOC667312, Olfr949-ps1, Olfr950-ps1, Olfr951, Olfr952, Olfr953-ps1, Olfr954, Olfr955, Olfr956-ps1, Olfr44, Olfr957, Olfr958, Olfr959, AW551984, Olfr148, Olfr960, Olfr961, GA_x5J8B7W60AJ-4787-4010, Olfr963, Olfr964-ps1, Olfr149, Olfr965, Olfr966-ps1, Olfr150, Olfr967, Olfr968, Olfr969, Olfr970, Olfr971, Olfr972, Olfr973, LOC100043015, Olfr974, Olfr975, Olfr976, Olfr977-ps1, Olfr978, Olfr979, Olfr980, Olfr981, 1700001J11Rik, Olfr982, Olfr983, Olfr984, Olfr985, 1700030E15Rik, LOC235279, Olfr986, Zfp202, Scn3b, Gramd1b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-421C21.T7 (MSMg01no421_c21.b1)MSMg01-421C21.TJ (MSMg01no421_c21.g1)
ACCAG515869AG515870
length776762
length of high quality
(start - end)		452 (76 - 527)379 (79 - 457)
definitionCHROMAT_FILE: MSMg01no421_c21.b1 PHD_FILE: MSMg01no421_c21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:41:15 2005CHROMAT_FILE: MSMg01no421_c21.g1 PHD_FILE: MSMg01no421_c21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:41:15 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCATTTTCCCTTCCCGGAAAAGTGTCTTAGTGCTTTCCTATA
GTCCTCCTGTGGGGTGGGTAAATGCAGGCAAACTCCATGCATTCTGACTC
CCCAAGAGGTCATGCCCAGTGGCTGAGCAGGCACTGACTGACACCCTCTA
TAGGATGTAGGGTTGGTAAAGATTTTTTTTAACCAATCTTTAGGTTGGCA
TTTTGTTCTGTTGACAGTGTCCTTTGCTTACAGAAGTTTTTCAGTTTTAT
GAAGTCTCATTTGTCAATTGATCTTAGAGCCTGATTCAGTTTAACCAGCG
CCATTTAAAATATCTTTTTTCCAATGGGTAGTTTTGGATTCTTTGTTAAA
GATCATGTGACCATAAGAGTGTGGGCTCATTTCTAGGTCTTCAATTCTAT
TCCATTGATCTACCTGTTTGTCTCTGTACAAATATTATGAGATTTTCAAT
CACTGTTGCTCTGTAGTTTGAGAAGGTGGTTCTCCCAGAATTTCTTTTGT
TGTTGAGATTTGTTTCACTATCCTGGATTTTTTCTTATTACCGATAAAAC
TGGAGAATGTTCTTTCTATCCCCATAAGAATTGACCTGAAATTTTGAAGG
GAATTGGATTTGAGCCTGAAAATTCCTTTCTGTATAAGGTCCCTTTTTCC
CTGGTAAACCCCCTGAGCGTTGCGCCCGGAACATTTTTTCTCTTTTTAGG
ATGTTCCCTATCTTTTTTCTTTAACA

NNNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTTGTTTTCAGACATTAACATTT
TCTAATTCTTAAGATTCATTGTCTGTAAATGCCTGTGAATATTTTTTGTC
ATCTGGACCATCTTTAGCTATAAGGACTGGACACAAGGTAACACTAGGAT
TAAGACCTGGACACAGCAGAGCAGTTATTTTAAAGACTCACAGTCACTGT
GACAGGATGAACAGAATCAATGTAAGGCAACACAGTCTGAGTACCAGCAG
GGAAAGTGGAGTTCAGCATAAAGTTCACCACATCTAAGGAACTATTGGCA
GTATATAACTGCTAAGAGAGTTCATATCAATTTTCTCTCAACAGGAACTA
CCAAACAAGTTTATAGTGTGATAGAGGGAATGTGTGTGTTTGTGTGTGTG
TGTGTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNTNNNNNNNNNNNNNNNNTNNNNTNNN
NNNNNNNNTNNTNTTTNTTTTTTTTNTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNNTTTTTTTTTTTTTTNT
NTTNNTTTTTTTTTTTNTTTTTTTTTTTTTTTTTTTTTNTTTTTTTTTTT
TTTTTTTTTTTNNTTTTTTTTNTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTNNTTTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no421_c21.g1 MSMg01no421_c21.g1 CHROMAT_FILE:
MSMg01no421_c21.g1 PHD_FILE: MSMg01no421_c21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:41:15 2005
         (379 letters)



>mm_chr9_39127245_39128023
          Length = 779

 Score =  708 bits (366), Expect = 0.0
 Identities = 375/378 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttgttttcagacattaacattttctaattcttaagattcattgtctgtaaatgcctgtga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttgttttcagacattaacattttctaattcttaagattcattgtctgtaaatgcctgtga 260

                                                                       
Query: 61  atattttttgtcatctggaccatctttagctataaggactggacacaaggtaacactagg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atattttttgtcatctggaccatctttagctataaggactggacacaaggtaacactagg 320

                                                                       
Query: 121 attaagacctggacacagcagagcagttattttaaagactcacagtcactgtgacaggat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 attaagacctggacacagcagagcagttattttaaagactcacagtcactgtgacaggat 380

                                                                       
Query: 181 gaacagaatcaatgtaaggcaacacagtctgagtaccagcagggaaagtggagttcagca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gaacagaatcaatgtaaggcaacacagtctgagtaccagcagggaaagtggagttcagca 440

                                                                       
Query: 241 taaagttcaccacatctaaggaactattggcagtatataactgctaagagagttcatatc 300
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 taaagttcaccccatctaaggaactattggcagtatataactgctaagagagttcatatc 500

                                                                       
Query: 301 aattttctctcaacaggaactaccaaacaagtttatagtgtgatagagggaatgtgtgtg 360
           | |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agttttctctcaacgggaactaccaaacaagtttatagtgtgatagagggaatgtgtgtg 560

                             
Query: 361 tttgtgtgtgtgtgtgtg 378
           ||||||||||||||||||
Sbjct: 561 tttgtgtgtgtgtgtgtg 578


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 379
Length of database: 779
Length adjustment: 9
Effective length of query: 370
Effective length of database: 770
Effective search space:   284900
Effective search space used:   284900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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