BAC Information

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BAC

Clone NameMSMg01-421M18
Chromosome9 (Build37)
Map Location 98,541,137 - 98,541,450
singlet/doubletsinglet
Overlap genenone
Upstream geneClstn2, LOC667298, Nmnat3, Rbp1, Rbp2, 4930579K19Rik, Copb2, Mrps22
Downstream geneEG623166, EG623186, 2410012M07Rik, LOC546155, LOC100040370, 7420426K07Rik, LOC100040380, LOC667347, Foxl2os, Foxl2, Faim, Gm1123, Pik3cb, LOC100040442, LOC100040757, EG623459, Cep70, D9Ertd280e, Mras, LOC623534, Armc8, Dbr1, A4gnt, Dzip1l
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-421M18.T7 (MSMg01no421_m18.b1)MSMg01-421M18.TJ (MSMg01no421_m18.g1)
ACCAG516339AG516340
length729778
length of high quality
(start - end)
315 (328 - 642)246 (81 - 326)
definitionCHROMAT_FILE: MSMg01no421_m18.b1 PHD_FILE: MSMg01no421_m18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:42:06 2005CHROMAT_FILE: MSMg01no421_m18.g1 PHD_FILE: MSMg01no421_m18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:42:06 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNAAACTTATAATTGCGGCCGCTAAACGACTCCTATATTCAGAACAGCGC
GGAATTCCCTGTTATAACGCAGAAATGAGCTCAGTGGTCCAGAGGTGATT
GGGCAACACAGACCAATCACCTTAAAATGTCTACCCAATAACGCCACTTC
TGGGAATCTATCTCTAAGCGTTCCTTTGAAATGCAAGCCGAGCTTTTCCT
AGCCTGACTTGCAAATACTGCACATCAGACAAACAAACCTGCACAAGCTG
ACATCCACCCTCCTTAGCCCAAGTAGGGAAGGCGGGCTTATAATGATAAT
GACTGAACAGAGAATCCAACTCTTTGATAAAGACCTCGCTGATAATGTTA
AGGCACATTCCCAATGCGGCATGTGAGGGGCTGGGCACAGATCCTCAGAA
TCAGAAATACTTTAGGATCTCACGAATGTAAGGAAATTAACTGGGAGGAG
GCCATGGAAGGTTGAAGGCAACATGCCGCAGCGTAGGTGACCTCTTTCTG
CAGCCTTTGGTGATTGTAAAGCCCACAGGGACTGCACTCTTCAGTGTAGC
TGGAGAAAACAGCCAGACATAACAATGAGTGGTGGGAAATGATCCCTGGC
TGGAGCCTCAGGAGATGGCAAGGGCAGGGCCAGCTCCCTCAGGGCTCAGG
TAATTTATGTCTTGAGGAGTGTCAAGTGCCCGTGCCTGTGCCCATGTAAC
ATGGGGTGGGGGGCTAGAGCTCTATGGTT
ATTACTCGATGATANTNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCAGAAATTCTCTCTCCTGGGCTCACAT
GACAGAAGGAGGGAACTGACCCCAGCAAGTTGTTCTCTGACCTCCACATC
CATATCCACACCACTGCACACAATGAACAAGAGAACAAGATTGTACACAC
ACACACACACACACACACACACACACACACACACACATACACAGGGAAAC
TGAACTTTTAAAAGCCCATCATAGAAGCCAGGTTTTATATGGTACCTTTA
TATGGCACTACCTCAGTTACAAATGTATATTTTTTTATGCCTGAAGCTGT
GAGGAATAGGGAAGGGGTGGTAGAAGAATGGTGTAAAACAGGGGGTAGAA
TACATGATTATGGTGAGGGTTATGCTTCCAACTAATTATCATACAATTAT
ACCTGAACATGGAAATATGACAGCATGCTATAAAATTGAACGAAATCTAA
TCTCTGTGGTTTATTTCATTGTAATACTCAGCCCCAACTCCTTTCCTGAC
TTTCATCATGTCAATGGATCTTACTGTTAGTATCTCCATTGTGCCTGTTC
CTCTGTTCCTATAATGATCTCTTCGTTCACTTTCCCCCGCGAATTTATCC
TTTAGTTCTGTTTATTTACCTTTTTTATTTTTCTCTTTTTTTTACTCACC
ATACTCCCCTTTTTAAGTATTCATCTCATCAACTCTCACTATCATTCAAT
ATCACTTCGTGCCCCCTATTTATTCCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no421_m18.b1 MSMg01no421_m18.b1 CHROMAT_FILE:
MSMg01no421_m18.b1 PHD_FILE: MSMg01no421_m18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:42:06 2005
         (315 letters)



>mm_chr9_98540936_98541650
          Length = 715

 Score =  569 bits (294), Expect = e-166
 Identities = 309/314 (98%)
 Strand = Plus / Minus

                                                                       
Query: 2   aaagacctcgctgataatgttaaggcacattcccaatgcggcatgtgaggggctgggcac 61
           |||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||
Sbjct: 515 aaagacctcgctgataatgttaaggcacattcccaatggggcatgtgaggggatgggcac 456

                                                                       
Query: 62  agatcctcagaatcagaaatactttaggatctcacgaatgtaaggaaattaactgggagg 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 agatcctcagaatcagaaatactttaggatctcacgaatgtaaggaaattaactgggagg 396

                                                                       
Query: 122 aggccatggaaggttgaaggcaacatgccgcagcgtaggtgacctctttctgcagccttt 181
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 395 aggccatggaaggttgaaggcaacatgccgcagcgtaggtggcctctttctgcagccttt 336

                                                                       
Query: 182 ggtgattgtaaagcccacagggactgcactcttcagtgtagctggagaaaacagccagac 241
           ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct: 335 ggtgattgtaaagcccacagggactgcactcctcagtgtagctggagaaaacagccagcc 276

                                                                       
Query: 242 ataacaatgagtggtgggaaatgatccctggctggagcctcaggagatggcaagggcagg 301
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 ataacaatgagtggtgggaaatgatccctggctggagcctcaggagatggcaagggcagg 216

                         
Query: 302 gccagctccctcag 315
           ||||||||||||||
Sbjct: 215 gccagctccctcag 202


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 315
Length of database: 715
Length adjustment: 9
Effective length of query: 306
Effective length of database: 706
Effective search space:   216036
Effective search space used:   216036
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)