Query= MSMg01no422_a15.b1 MSMg01no422_a15.b1 CHROMAT_FILE:
MSMg01no422_a15.b1 PHD_FILE: MSMg01no422_a15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:42:24 2005
(248 letters)
>mm_chr9_73970413_73971061
Length = 649
Score = 393 bits (203), Expect = e-114
Identities = 236/247 (95%), Gaps = 3/247 (1%)
Strand = Plus / Plus
Query: 4 gttttattcacttttctatcac-agggtgggtaggtaagggtgacgattgaaactagaat 62
||||||||||||| ||| |||| |||| | ||||||||||||||||||||||||||||||
Sbjct: 204 gttttattcacttatctgtcacaaggg-gagtaggtaagggtgacgattgaaactagaat 262
Query: 63 aaattattagctttat-tacactttcatgattattgtgaacccagacccatttaaagagt 121
|||| |||| |||||| | ||||||||||||| |||||||||||||||||||||||||||
Sbjct: 263 aaataattacctttatatccactttcatgattcttgtgaacccagacccatttaaagagt 322
Query: 122 tcaattcaatggattttaatactgcaattcccttaatctccaaataaactcaaaatgtat 181
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 323 tcaattcaatggattttaatactgcaattcccttaatctccaagtaaactcaaaatgtat 382
Query: 182 aaacaaaactctctctggcttaaggctgagcagcctatcccttttgataacttaaacaaa 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 aaacaaaactctctctggcttaaggctgagcagcctatcccttttgataacttaaacaaa 442
Query: 242 agactct 248
|||||||
Sbjct: 443 agactct 449
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 248
Length of database: 649
Length adjustment: 9
Effective length of query: 239
Effective length of database: 640
Effective search space: 152960
Effective search space used: 152960
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no422_a15.g1 MSMg01no422_a15.g1 CHROMAT_FILE:
MSMg01no422_a15.g1 PHD_FILE: MSMg01no422_a15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:42:24 2005
(246 letters)
>mm_chr9_74123585_74124230
Length = 646
Score = 456 bits (236), Expect = e-133
Identities = 242/244 (99%)
Strand = Plus / Minus
Query: 1 ttgatgaaagaggaaaagataacagccccacactgtgacctcctggggggggggtgttaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ttgatgaaagaggaaaagataacagccccacactgtgacctcctggggggggggtgttaa 385
Query: 61 tttgagagtgcagctgctaagagccagcagcttccagtgtcctcccccacaccctctcaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tttgagagtgcagctgctaagagccagcagcttccagtgtcctcccccacaccctctcaa 325
Query: 121 ggaccccaaagctgtgtcaaatttatcattttatacttgactatgtttaaatggcttcct 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ggaccccaaagctgtgtcaaatttatcattttatacttgactatgtttaaatggcttcca 265
Query: 181 tctgcactctccgactcttccaagacacatctgtcaagaatgtcctctgtatcttggaag 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 cctgcactctccgactcttccaagacacatctgtcaagaatgtcctctgtatcttggaag 205
Query: 241 tttg 244
||||
Sbjct: 204 tttg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 246
Length of database: 646
Length adjustment: 9
Effective length of query: 237
Effective length of database: 637
Effective search space: 150969
Effective search space used: 150969
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
