Query= MSMg01no422_a16.b1 MSMg01no422_a16.b1 CHROMAT_FILE:
MSMg01no422_a16.b1 PHD_FILE: MSMg01no422_a16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:42:24 2005
(298 letters)
>mm_chr9_7333764_7334461
Length = 698
Score = 522 bits (270), Expect = e-153
Identities = 285/290 (98%)
Strand = Plus / Minus
Query: 5 gaattcacaaatatttccctaaaaatgcaaatcatttttattataacataaaaaaatcta 64
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gaattcacaaatatttcaataaaaatgcaaatcatttttattataacataaaaaaatcta 249
Query: 65 ctaagatgtcttacctattcttattattgaaaaagaaaggaagtagccaggcagtggtga 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ctaagatgtcttacctattcttattattgaaaaagaaaggaagtagccaggcagtggtga 189
Query: 125 cacatgcctttaatcccagtactcaggaggcagaggcaggcgaatctctgtgagttccag 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 cacatgcctttaatcccagtactcaggaggcagaggcaggcgaatctctgtgagttccag 129
Query: 185 gacaacctggcctacagagtgaattgcaggacaatctgggctacacatgaaacaaagaaa 244
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 gacagcctggcctacagagtgaattgcaggacaatctgggctacacatgaaacaaagaaa 69
Query: 245 aaaaaagagggaagaaaggaagggaggaagggagggagggagggagggag 294
||||||||||||||||||||||| ||| ||||||||||||||||||||||
Sbjct: 68 aaaaaagagggaagaaaggaaggaagggagggagggagggagggagggag 19
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 298
Length of database: 698
Length adjustment: 9
Effective length of query: 289
Effective length of database: 689
Effective search space: 199121
Effective search space used: 199121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no422_a16.g1 MSMg01no422_a16.g1 CHROMAT_FILE:
MSMg01no422_a16.g1 PHD_FILE: MSMg01no422_a16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:42:24 2005
(557 letters)
>mm_chr9_7119605_7120559
Length = 955
Score = 994 bits (514), Expect = 0.0
Identities = 546/560 (97%), Gaps = 8/560 (1%)
Strand = Plus / Plus
Query: 1 accagggggatgaatgacaggcttgctccctgccctcaaagaacttccaggtgaacataa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 accagggggatgaatgacaggcttgctccctgccctcaaagaacttccaggtgaacataa 260
Query: 61 acatagtaatatggttgttgagtgttagggtaaaagcaagtgggagaaacacctgagtca 120
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 261 acatagtaatatggttgttgagtgttagggtagaagcaagtgggagaaacacctgagtca 320
Query: 121 gcctgggggaaatcttccttctctaaggactgggaaaactagttagtctgaaatatttta 180
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gcctgggggaaatcttctttctctaaggactgggaaaactagttagtctgaaatatttta 380
Query: 181 aaacttgtcttaatttcaccaggttttatcctcacaaaggaagagaagcaaacaaaagaa 240
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 381 aaacttgtcttaatttcaccaggtttt-tcctcacaaaggaagagaagcaaacaaaagaa 439
Query: 241 tataaaagttctttta---aattttctatttttgtgtaatcaatatgaaaaaaactgaca 297
||||||||| | | |||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 tataaaagtac----agcaaattttctatttttgtgtaatcaatatgaaaaaaactgaca 495
Query: 298 aactgatctctaaatgaacttcagactagtagtcatttggcatcaaaagagtagtagcta 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 aactgatctctaaatgaacttcagactagtagtcatttggcatcaaaagagtagtagcta 555
Query: 358 tttaatttttatgtttgcatttttcataaaattgataatatgaaagaaaatccacgtcat 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 556 tttaatttttatgtttgcatttttcataaaattgataatatgaaagaaaatccacatcat 615
Query: 418 tttttaaaaattatgtatgcatggaaacagactgtaatcttctattcatgctaagcatct 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 tttttaaaaattatgtatgcatggaaacagactgtaatcttctattcatgctaagcatct 675
Query: 478 actcatgcctcatggtaaatccctctaagacagcagtattctgctaatgctggtgatggt 537
|||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct: 676 actcatgcctcatggtaaattcctctaagacagcagtattctgccaatgctggtgatggt 735
Query: 538 catgatgtctacgtgcattc 557
||||||||||||||||||||
Sbjct: 736 catgatgtctacgtgcattc 755
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 557
Length of database: 955
Length adjustment: 10
Effective length of query: 547
Effective length of database: 945
Effective search space: 516915
Effective search space used: 516915
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
