Query= MSMg01no422_a20.b1 MSMg01no422_a20.b1 CHROMAT_FILE:
MSMg01no422_a20.b1 PHD_FILE: MSMg01no422_a20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:42:25 2005
(630 letters)
>mm_chr9_63670767_63671797
Length = 1031
Score = 1145 bits (592), Expect = 0.0
Identities = 616/624 (98%), Gaps = 1/624 (0%)
Strand = Plus / Minus
Query: 8 gaattcaaaggagctgggtccttccggtcccatagaaaaacacgctggtcaactctctgt 67
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 831 gaattcaaaggagctgggtccttccggtcccatagaaaaacacgctggtcaactctctgt 772
Query: 68 tcagcccaaggcagcgcctcgctgccctgcagtggggcagacactggctgtctgtgttgg 127
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 771 tcagcccaaggcagcgcctcgctgccctgcagtggggcagacactggctgtctgtgttgg 712
Query: 128 ggctgaggctctctccaggcaagtcgtaatgacttctcagagggagctggcctgggctca 187
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 711 ggctgaggctctctccaggcaagtcgtaatgacttctcagagggagctggcctgggctca 652
Query: 188 gaccactctaggtggagagagaggaagctgaagacaaaactgcacttctcgtaaaggtct 247
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 651 gaccactctgggtggagagagaggaagctgaagacaaaactgcacttctcgtaaaggtct 592
Query: 248 tagtct-aaaatacaagcaggcttcgcctagagaatgtcggcaagggtgcccgtctgcac 306
|||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 591 tagtctaaaaatacaagcgggcttcgcctagagaatgtcggcaagggtgcccgtctgcac 532
Query: 307 gaaggaacagagcctcacagggttcccgacaaaggctgctccatcaaggggaggttgcaa 366
|||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||
Sbjct: 531 gaaggaacagagcctcacagggttcctgacaaaggctgctccgtcaaggggaggttgcaa 472
Query: 367 agcaacccttctctcgatgagcatcgagctccacatgattataaggaaggatctcagaaa 426
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 471 agcaacccttctctcaatgagcatcgagctccacatgattataaggaaggatctcagaaa 412
Query: 427 gcagaatggtttccagtaacctgagtttgtggacctgaagaccagctcaggctaggcttc 486
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 411 gcagaatggtttccagtaacctgagtttgtggacctgaagaccagctcaggctaggcttc 352
Query: 487 aggcaaagcttgatccagtggttcaaatacatcaccaacgcgctcagggttttatgtctc 546
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 351 aggcaaagcttgatccagtggttcaaatacatcaccaacgtgctcagggttttatgtctc 292
Query: 547 tctgcagaatcattgagcttctgtaattagcaagggaaaaaaatagactgtctagttaaa 606
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 291 tctgcagaatcattgagcttctgtaattagcaaggggaaaaaatagactgtctagttaaa 232
Query: 607 tttgaatttcatataattccttag 630
||||||||||||||||||||||||
Sbjct: 231 tttgaatttcatataattccttag 208
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 630
Length of database: 1031
Length adjustment: 10
Effective length of query: 620
Effective length of database: 1021
Effective search space: 633020
Effective search space used: 633020
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no422_a20.g1 MSMg01no422_a20.g1 CHROMAT_FILE:
MSMg01no422_a20.g1 PHD_FILE: MSMg01no422_a20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:42:25 2005
(486 letters)
>mm_chr9_63505400_63506285
Length = 886
Score = 878 bits (454), Expect = 0.0
Identities = 475/482 (98%)
Strand = Plus / Plus
Query: 1 catgggcctagtcctaggaacactgacacctaccaatccaaacaaaggtggtaggtcacc 60
||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 201 catgggcttagtcctaggaacactgacacctaccaatccaaacaaaggtggcaggtcacc 260
Query: 61 cagagtgtctgtcacacctggaggaacactgttctgggaaaggtgagctttggggtagaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cagagtgtctgtcacacctggaggaacactgttctgggaaaggtgagctttggggtagaa 320
Query: 121 aaaggccttcccaaggagatattgtaccctcctctaaacagctctgtgatgggccaggca 180
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 321 aaaggccttcccaaggagatattgtaccctcctctaaacagctctgtgatggtccaggca 380
Query: 181 cctggagcagcaaaggagggaggctgagctcagatggacacgacatcaggactcacagca 240
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cccggagcagcaaaggagggaggctgagctcagatggacacgacatcaggactcacagca 440
Query: 241 gctgtgtcatggcaccagggcacacaacttgaaggctgccacttcagagagtacctgact 300
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gttgtgtcatggcaccagggcacacaacttgaaggctgccacttcagagagtacctgact 500
Query: 301 caactctgactcagaaacaggtagaataggatagccccctgtgtggcttttaattcgctg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 caactctgactcagaaacaggtagaataggatagccccctgtgtggcttttaattcgctg 560
Query: 361 cacatggctgtgcctttgagttctctctctccctccatccccactatcagccctagatgg 420
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 561 cacatggctgtgcctttgagttctctctctccctccatttccactatcagccctagatgg 620
Query: 421 tccttcaggcattccagccatagcaggtacaaagcaaaaaagtataattactctatcttc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tccttcaggcattccagccatagcaggtacaaagcaaaaaagtataattactctatcttc 680
Query: 481 ct 482
||
Sbjct: 681 ct 682
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 486
Length of database: 886
Length adjustment: 10
Effective length of query: 476
Effective length of database: 876
Effective search space: 416976
Effective search space used: 416976
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
