Query= MSMg01no422_g21.b1 MSMg01no422_g21.b1 CHROMAT_FILE:
MSMg01no422_g21.b1 PHD_FILE: MSMg01no422_g21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:42:52 2005
(560 letters)
>mm_chr9_72564174_72565133
Length = 960
Score = 1029 bits (532), Expect = 0.0
Identities = 553/560 (98%)
Strand = Plus / Plus
Query: 1 gatttgccgtcatgtttcatcgcttcccactctggggcatactgctttacatttctccaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gatttgccgtcatgtttcatcgcttcccactctggggcatactgctttacatttctccaa 260
Query: 61 atttgttctaacacaccttgggtttgttttttaaacatttgaatattactcaatttgttg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atttgttctaacacaccttgggtttgttttttaaacatttgaatattactcaatttgttg 320
Query: 121 tatatcttggtataagataataggtagggatgtgaattaattttttcccaacaagtacct 180
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tatatcttggtataagatactaggtagggatgtgaattaattttttcccaacaagtacct 380
Query: 181 attctccaaacaatcttcccatttcgccatagatgtaaaatgtgcttgttgatgccgagt 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 381 attctccaaacaatcttcccatttcgccatagatgtaaaatgtgcttgttgatgccaagt 440
Query: 241 tcctctgagttttgttctgtttcccagtcatcttttgagctatgtgtgtgcagcttacac 300
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||
Sbjct: 441 tcctctgagttttgttctgtttcccagttgtcttttgagctatgtgtgtgcagcttagac 500
Query: 301 cccgactgttttctctgacagaactgtccacacatctcttctcccttagaatggtgttgg 360
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cccgactgttttctatgacagaactgtccacacatctcttctcccttagaatggtgttgg 560
Query: 361 ttatgactgacttgtttgtgtttctacttgaacttgagaattagctctcattatttaaaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttatgactgacttgtttgtgtttctacttgaacttgagaattagctctcattatttaaaa 620
Query: 421 aacatctgtaacataataattgtatcagaattttgacagatttgccctcggaaattgatc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aacatctgtaacataataattgtatcagaattttgacagatttgccctcggaaattgatc 680
Query: 481 catcatgcctgctgtctgtggtgtccgggatggaatgcaggacttgatgcttgctattcc 540
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 681 catcatgcctgctgtctgtggtgtctgggatggaatgcaggacttgatgcttgctattcc 740
Query: 541 cagactctacgaactgagct 560
||||||||||||||||||||
Sbjct: 741 cagactctacgaactgagct 760
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 560
Length of database: 960
Length adjustment: 10
Effective length of query: 550
Effective length of database: 950
Effective search space: 522500
Effective search space used: 522500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no422_g21.g1 MSMg01no422_g21.g1 CHROMAT_FILE:
MSMg01no422_g21.g1 PHD_FILE: MSMg01no422_g21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:42:52 2005
(499 letters)
>mm_chr9_72736367_72737265
Length = 899
Score = 675 bits (349), Expect = 0.0
Identities = 376/385 (97%), Gaps = 1/385 (0%)
Strand = Plus / Minus
Query: 114 attaaaatacattttaaaagacaccctgggcaggcaagaaggtttaatgggtgaggagcc 173
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 881 attaaaatacattttaaaagacaccctggacaggcaagaaggtttaatgggtgaggagcc 822
Query: 174 tgctgccaagcctgactacttgaattcaatccccatgatcctcatgacagaaagcatcgc 233
||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 821 tgctgtcaaacctgactacttgaattcaatccccatgatcctcatgacagaaagcatcgc 762
Query: 234 ctcaaaaaaagaaaatatctctgtaagttcaaggccagcctgctctacattggaagttct 293
||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 761 ctc-aaaaaagaaaacatctctgtaagttcaaggccagcctgctctacattggaagttct 703
Query: 294 aggacagctggaactacagaaagaccttgtctccaaaaaaccagaaaacaacaaaagaaa 353
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 702 aggacagctggaactacagaaagaccttgtctccaaaaaaccagaaaacaacaaaagaaa 643
Query: 354 acaaaaataaaatcacaacaaaaatacccaatcaaataaccaaaagatgcaaaaataatc 413
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 642 acaaaaataaaatcacaacaaaaatacccaatcaaataaccaaaagatgcaaaagtaatc 583
Query: 414 tccttataaaaacatacaactcccacataggtgctctctagtcccctcttattttttttt 473
||||||| |||||| ||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 582 tccttattaaaacaaacaactcccacataggtgccctctagtcccctcttattttttttt 523
Query: 474 taaagatttatttatttattatatg 498
|||||||||||||||||||||||||
Sbjct: 522 taaagatttatttatttattatatg 498
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 499
Length of database: 899
Length adjustment: 10
Effective length of query: 489
Effective length of database: 889
Effective search space: 434721
Effective search space used: 434721
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
