BAC Information

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BAC

Clone NameMSMg01-422N14
Chromosome9 (Build37)
Map Location 7,578,551 - 7,579,080
singlet/doubletsinglet
Overlap geneMmp27
Upstream geneLOC100039400, LOC100039418, EG547034, Dync2h1, LOC100039658, Dcun1d5, Mmp13, Mmp12, Mmp1b, Mmp3, Mmp1a, Mmp10, Mmp8
Downstream geneMmp20, Mmp7, LOC665057, LOC100039782, Tmem123, Birc2, Birc3, Yap1, EG665090, 9230110C19Rik, AK129341, LOC100039855, 1700018P22Rik, LOC665108, 1700128F08Rik, Trpc6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-422N14.T7 (MSMg01no422_n14.b1)MSMg01-422N14.TJ (MSMg01no422_n14.g1)
ACCAG517142AG517143
length745740
length of high quality
(start - end)		534 (37 - 570)446 (66 - 511)
definitionCHROMAT_FILE: MSMg01no422_n14.b1 PHD_FILE: MSMg01no422_n14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:43:23 2005CHROMAT_FILE: MSMg01no422_n14.g1 PHD_FILE: MSMg01no422_n14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:43:23 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAATG
CTCTCTCCAGGCCTCCGTGGGCACCAGTCACATATGTCGTATACAGATAC
ACATGCAGAGAAAACACCCATTCACAAAAAGTAAATAGTTTCTTAAAACT
GTAGAAGTCCATTCTTTTTTTCCAAAGCAACCTATCTCATCTATGTTCCT
TTTTATGGGATTATTATACTTAGCAAATAAAAAGAAATAGGACAAGAAAA
AAGTACAATAGAGGCATGAGATTACTGGGTTGGCAGCTGAGAGGAACTAA
ATACCTCGTTAATTTCAAACTTCCTGAGTCACCTCTTCCTCCCTGTAAGA
CACAGAGCAAAAGACATCTGAAGAGATCCCTTTCTCTGTCTAGATGAGAA
TTTCTGGGTCATCAGGGGATATTCTGTCTTGCCCGGTTACCCCAAATCCA
TCCACACACTCGGATTTCCAAGACGTGTGAAGAAAATTGATGCAGCCGTC
TGTGATCATGATACAAGAAAAACCTTCTTTTTTGTTGGCATCTGGTGCTG
GAGGTAACTCTGTTGTTTGATTAGTGAGGGAGGCATCCCTGGCAATATTA
CCCCACCATATCCACAACAAAACAAATCTACAGTCTCCCAGTGGATTTGT
GTTGCCGGCCTCCTCCAGCGTAAGTTTGGACCCTTATTAAACTAAAAGGG
TTGAAAGGAGCCCAATAATTTTTTGGCCACTTTAATAAAAAACAA

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXTGCTCTGCTTGCTGCCCTCACATCCCTCTTAATCT
AAGAATTACGAAAACTTTAAGGGGGCTTCAATTCCCTCACTGGACAGCAT
CTCTGGCATTCACAGTACCAATGCTTTATCTCGTTCAGGCATTGGTGTTG
GAGCAGACTAATGATTTAATCACCATCCTAGAAAAGAACTAAGCAATGTA
GATTGTCAGCAATGGCCACCACCCTTAGAAAATATTTGGAAAAATAAAGT
TGTTAGTGAAGGTATGTTGAGATTTTTTTACTACTGGCTCTGATGCAAAA
AATATTGTGGAATAATTTGAAGTTCAGAAAGGCATACTCTTATTAGTTAA
GCTAGGGACCTCTTATGGTCAGGGAACAAGAACAATGGCAGCACTGGCTG
AAGTGACTTCACTGAGACTGGACTGATGATGACTGATTTCTTTTTTTTTT
TTTTTTAACAGATCTTGCCTGAGTTTATTTGTAAGAACAGCTTAGGACTC
TGGTCATCTGCAAATAATGTGCGGCGAAGTGTGCCTCCACCATCCTGCCT
GCCTTCAACCTGGTATGATACCTTTTTCATATTGGTCCTCTTCCAGTGCC
CTGGTTTTCTTTTGGTCGCCCTAAATACTCTAGGCAACCCTTCTTCTGTC
TACTATATCTCGTCCCTTATACCGCTTGTTTTTGCTCTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no422_n14.b1 MSMg01no422_n14.b1 CHROMAT_FILE:
MSMg01no422_n14.b1 PHD_FILE: MSMg01no422_n14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:43:23 2005
         (534 letters)



>mm_chr9_7578347_7579280
          Length = 934

 Score = 1009 bits (522), Expect = 0.0
 Identities = 528/530 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcaatgctctctccaggcctccgtgggcaccagtcacatatgtcgtatacagatac 64
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaatgctctcttcaggcctccgtgggcaccagtcacatatgtcgtatacagatac 264

                                                                       
Query: 65  acatgcagagaaaacacccattcacaaaaagtaaatagtttcttaaaactgtagaagtcc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 acatgcagagaaaacacccattcacaaaaagtaaatagtttcttaaaactgtagaagtcc 324

                                                                       
Query: 125 attctttttttccaaagcaacctatctcatctatgttcctttttatgggattattatact 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 attctttttttccaaagcaacctatctcatctatgttcctttttatgggattattatact 384

                                                                       
Query: 185 tagcaaataaaaagaaataggacaagaaaaaagtacaatagaggcatgagattactgggt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tagcaaataaaaagaaataggacaagaaaaaagtacaatagaggcatgagattactgggt 444

                                                                       
Query: 245 tggcagctgagaggaactaaatacctcgttaatttcaaacttcctgagtcacctcttcct 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 445 tggcagctgagaggaactaaatacctcgttaatttcaaacttcctgagtcatctcttcct 504

                                                                       
Query: 305 ccctgtaagacacagagcaaaagacatctgaagagatccctttctctgtctagatgagaa 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ccctgtaagacacagagcaaaagacatctgaagagatccctttctctgtctagatgagaa 564

                                                                       
Query: 365 tttctgggtcatcaggggatattctgtcttgcccggttaccccaaatccatccacacact 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tttctgggtcatcaggggatattctgtcttgcccggttaccccaaatccatccacacact 624

                                                                       
Query: 425 cggatttccaagacgtgtgaagaaaattgatgcagccgtctgtgatcatgatacaagaaa 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 cggatttccaagacgtgtgaagaaaattgatgcagccgtctgtgatcatgatacaagaaa 684

                                                             
Query: 485 aaccttcttttttgttggcatctggtgctggaggtaactctgttgtttga 534
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 aaccttcttttttgttggcatctggtgctggaggtaactctgttgtttga 734


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 534
Length of database: 934
Length adjustment: 10
Effective length of query: 524
Effective length of database: 924
Effective search space:   484176
Effective search space used:   484176
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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