Query= MSMg01no422_p16.b1 MSMg01no422_p16.b1 CHROMAT_FILE:
MSMg01no422_p16.b1 PHD_FILE: MSMg01no422_p16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:43:33 2005
(546 letters)
>mm_chr9_48001413_48002358
Length = 946
Score = 1017 bits (526), Expect = 0.0
Identities = 538/546 (98%), Gaps = 8/546 (1%)
Strand = Plus / Plus
Query: 5 gaattcttaatcttttc----cagttagggaggccaccggtccatttgctacattagtaa 60
|||||||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcttaatc----cacctcagttagggaggccaccggtccatttgctacattagtaa 260
Query: 61 caaaggttccagttacaggacactaccccagaagcaactggaggacttctacaatatacc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 caaaggttccagttacaggacactaccccagaagcaactggaggacttctacaatatacc 320
Query: 121 atatattcacagtatgctctttctaaaaacaaaattaaaaacccaggtgtggtcttagat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atatattcacagtatgctctttctaaaaacaaaattaaaaacccaggtgtggtcttagat 380
Query: 181 tctttaaaaacttgagaaaacttgacaaaaattgttttactttctttttccatattgctg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tctttaaaaacttgagaaaacttgacaaaaattgttttactttctttttccatattgctg 440
Query: 241 ctttccatgtagaggcaaaaacaaacaaacaaacaaacaaacaaaaccaacaaaaatagg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctttccatgtagaggcaaaaacaaacaaacaaacaaacaaacaaaaccaacaaaaatagg 500
Query: 301 tccagtctgctgagcaccgagggatcctcgtcctcctgcgtctgcacggctgtccctgtg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tccagtctgctgagcaccgagggatcctcgtcctcctgcgtctgcacggctgtccctgtg 560
Query: 361 gaaagtgttgtcaaagcatcatgggatcacagaacagacatggagtcggcaggtgaacct 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gaaagtgttgtcaaagcatcatgggatcacagaacagacatggagtcggcaggtgaacct 620
Query: 421 gctcgcggatgtatcagtcacagctctcaccagctcgggctgtatttcacatgataatat 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gctcgcggatgtatcagtcacagctctcaccagctcgggctgtatttcacatgataatat 680
Query: 481 tttcctggccgtttagcacctaataaatcatatatttatggaaacaaaaatgaagtcatc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tttcctggccgtttagcacctaataaatcatatatttatggaaacaaaaatgaagtcatc 740
Query: 541 ttcgta 546
||||||
Sbjct: 741 ttcgta 746
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 546
Length of database: 946
Length adjustment: 10
Effective length of query: 536
Effective length of database: 936
Effective search space: 501696
Effective search space used: 501696
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no422_p16.g1 MSMg01no422_p16.g1 CHROMAT_FILE:
MSMg01no422_p16.g1 PHD_FILE: MSMg01no422_p16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:43:33 2005
(297 letters)
>mm_chr9_48178749_48179445
Length = 697
Score = 574 bits (297), Expect = e-168
Identities = 297/297 (100%)
Strand = Plus / Minus
Query: 1 tgcaccattcttgaagaggtcctgggtttagttcccagaaccatagtgggtggttcccaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 643 tgcaccattcttgaagaggtcctgggtttagttcccagaaccatagtgggtggttcccaa 584
Query: 61 ctgcctgcaactccagctgcaggggctccaactctctttcctggcttccatgagtgttta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 583 ctgcctgcaactccagctgcaggggctccaactctctttcctggcttccatgagtgttta 524
Query: 121 ccctccagtgcacatacccatgctcaggcactcataactgcatatgctcgaaaataataa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 523 ccctccagtgcacatacccatgctcaggcactcataactgcatatgctcgaaaataataa 464
Query: 181 agctttttaaaaagtgattgcgatgaatcccaaggacagtgggttcaggtttgagaataa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 463 agctttttaaaaagtgattgcgatgaatcccaaggacagtgggttcaggtttgagaataa 404
Query: 241 acaagaatgtctttctaccagcgtaatttcaactttcaaaatggaaaaaaaatgtct 297
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 acaagaatgtctttctaccagcgtaatttcaactttcaaaatggaaaaaaaatgtct 347
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 297
Length of database: 697
Length adjustment: 9
Effective length of query: 288
Effective length of database: 688
Effective search space: 198144
Effective search space used: 198144
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
