BAC Information

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BAC

Clone NameMSMg01-423B03
Chromosome9 (Build37)
Map Location 118,989,388 - 119,156,793
singlet/doubletdoublet
Overlap genePlcd1, Dlec1, Acaa1b, EG546165, Slc22a14, Slc22a13, 9330176C04Rik, Oxsr1
Upstream gene2010110K16Rik, Eomes, Golga4, Itga9, LOC100039768, Ctdspl, Vill
Downstream geneMyd88, Acaa1a, Xylb, Acvr2b, Endogl1, Scn5a, Scn10a, Scn11a, LOC100039837, Wdr48, Gorasp1, Ttc21a, Axud1, Cmya1, Cx3cr1, Ccr8, Slc25a38, Rpsa, Snora62, EG546166, Mobp, LOC100039898
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-423B03.T7 (MSMg01no423_b03.b1)MSMg01-423B03.TJ (MSMg01no423_b03.g1)
ACCAG517312AG517313
length729725
length of high quality
(start - end)		503 (40 - 542)598 (70 - 667)
definitionCHROMAT_FILE: MSMg01no423_b03.b1 PHD_FILE: MSMg01no423_b03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:43:40 2005CHROMAT_FILE: MSMg01no423_b03.g1 PHD_FILE: MSMg01no423_b03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:43:40 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(119,156,295 - 119,156,793)(118,989,388 - 118,989,985)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCT
GTTTATATCCTAGAACACTTTTAAATTGGATCATTCATTTCCTTGATTCC
TTTGTCTTTTGGGTTCTTTGTGTATTGTGGTTGTTAGTTGTCTGTCAGTT
AGACAGCCCTTTCTCACAGAGTACTGATCTACTCTCCCTTTTCCAGAGGC
CGGGCAGTGACAACCAAGTCCCTCCCACTAGGTTCATCTTTCACAGGTCA
TACCTTAGAACGTTGCTAGACAGGTGTGATGGCACATGTGCATACACTCA
CACTTGGGAAGCGAGTGGAGATTAGTCTCGACTACCTAGCAAGTTGCAGA
CCAGCCTCTTTAATAAAACAACAAAACACTCTCCTATAAAAACCAAAACC
AAAAAGAATTTAGAATGCTTAGAAATACTGAATAGTATATAGTACAGACA
AGTGCAGTGAAATAGTAATAATTCAGAATTAAGACAGCCTGTGAGTATCA
CCTGGCACAGAAGTTTGATCCTTGCCCCGTGTGCCCACTGAGATGGTGCA
GAGCTCTCCTACTCTGCAGCACTGCATGTCTTTCTTGCAGCTCTTCGCGG
CAGCTGAGCCCATGGGGACTTTGCTTCAAGTTCCAAAACAGATTTCTGCT
TATCTACCTCAGCCAGTTGGGCCGAGGCCCCCCCAGCCAGCTTAAGTCTT
CTCTCCGGCCTCTTGCAAAGTCTATCTAA

TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXCTAGAATGCACGGTTGAAACAGCAACCTCCC
CCCCCTGTACTATGATTTCCGAGGTAGGAGCCTTTGGAAGGTAATTTGAG
TCAGATGAGGACATGAAGGTGTGGCCCTGACCAAAGGTTTAGTGCCTATA
AAGGAGAGCTTTCTCTCTTCATGAGAGGTCAGAGAGAGAAAACGCAGCAG
CCTGCAAACAAGGGAGAGGGCCCTCCCCAGAACCAGCCATGCTAGTACCT
GAAGAAACACACTAGTGTTGGGCAAGCCAGCCAGTCAGTCCCTGCAGTGC
CCAGTTGGGTGTGTCTTTGAGGGAGTGTCAGGAGATTAAATGAGGAAAGA
AATGAGGTTCACTCCATTCCCTGGAGTCTCAGGTTGAGTAAGAAGGATGT
GAGCTGCACCTTAGTGTTCGTTCGCCCCTTTCTCTGTGCTTCCTGACGAT
GTAACCAGCCACCCGAGTTTCTACTGTAGGCCTTTCCTGCACGGTGGACC
ACATTCTCCTAAAACATAAAATAAACCCCTCTTCTCCTGACTTGTTTTTG
CCGAGTATCATAGCAACCAGCGTAGGATCCAACACACCCTGGCATTTTGT
TACTGAAGCACAACTGACCATAGATAGCACATCCCACGCCCGACCGGGAT
CCACTGCCCCTCAGAGGATACTGCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no423_b03.b1 MSMg01no423_b03.b1 CHROMAT_FILE:
MSMg01no423_b03.b1 PHD_FILE: MSMg01no423_b03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:43:40 2005
         (503 letters)



>mm_chr9_119156091_119156993
          Length = 903

 Score =  942 bits (487), Expect = 0.0
 Identities = 496/499 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctgtttatatcctagaacacttttaaattggatcattcatttccttgattccttt 64
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 703 gaattctgtttagatcctagaacacttttaaattggatcattcatttccttgattccttt 644

                                                                       
Query: 65  gtcttttgggttctttgtgtattgtggttgttagttgtctgtcagttagacagccctttc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 643 gtcttttgggttctttgtgtattgtggttgttagttgtctgtcagttagacagccctttc 584

                                                                       
Query: 125 tcacagagtactgatctactctcccttttccagaggccgggcagtgacaaccaagtccct 184
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 583 tcacagagtactgatctactctcccttttccagaggccgggcagtgacaacccagtccct 524

                                                                       
Query: 185 cccactaggttcatctttcacaggtcataccttagaacgttgctagacaggtgtgatggc 244
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 523 cccactaggttcatctttcacaggtcataccttagaacgtggctagacaggtgtgatggc 464

                                                                       
Query: 245 acatgtgcatacactcacacttgggaagcgagtggagattagtctcgactacctagcaag 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 463 acatgtgcatacactcacacttgggaagcgagtggagattagtctcgactacctagcaag 404

                                                                       
Query: 305 ttgcagaccagcctctttaataaaacaacaaaacactctcctataaaaaccaaaaccaaa 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 ttgcagaccagcctctttaataaaacaacaaaacactctcctataaaaaccaaaaccaaa 344

                                                                       
Query: 365 aagaatttagaatgcttagaaatactgaatagtatatagtacagacaagtgcagtgaaat 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 aagaatttagaatgcttagaaatactgaatagtatatagtacagacaagtgcagtgaaat 284

                                                                       
Query: 425 agtaataattcagaattaagacagcctgtgagtatcacctggcacagaagtttgatcctt 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 283 agtaataattcagaattaagacagcctgtgagtatcacctggcacagaagtttgatcctt 224

                              
Query: 485 gccccgtgtgcccactgag 503
           |||||||||||||||||||
Sbjct: 223 gccccgtgtgcccactgag 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 503
Length of database: 903
Length adjustment: 10
Effective length of query: 493
Effective length of database: 893
Effective search space:   440249
Effective search space used:   440249
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no423_b03.g1 MSMg01no423_b03.g1 CHROMAT_FILE:
MSMg01no423_b03.g1 PHD_FILE: MSMg01no423_b03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:43:40 2005
         (598 letters)



>mm_chr9_118989188_118990185
          Length = 998

 Score = 1110 bits (574), Expect = 0.0
 Identities = 592/598 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctagaatgcacggttgaaacagcaacctcccccccctgtactatgatttccgaggtagga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 201 ctagaatgcacggttgaaacagcaacctcccccccctgtactatgatttccaaggtagga 260

                                                                       
Query: 61  gcctttggaaggtaatttgagtcagatgaggacatgaaggtgtggccctgaccaaaggtt 120
           |||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||
Sbjct: 261 gcctttggaaggtaatttgagttagatgaggacatgaaggtgtggcccggaccaaaggtt 320

                                                                       
Query: 121 tagtgcctataaaggagagctttctctcttcatgagaggtcagagagagaaaacgcagca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tagtgcctataaaggagagctttctctcttcatgagaggtcagagagagaaaacgcagca 380

                                                                       
Query: 181 gcctgcaaacaagggagagggccctccccagaaccagccatgctagtacctgaagaaaca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gcctgcaaacaagggagagggccctccccagaaccagccatgctagtacctgaagaaaca 440

                                                                       
Query: 241 cactagtgttgggcaagccagccagtcagtccctgcagtgcccagttgggtgtgtctttg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cactagtgttgggcaagccagccagtcagtccctgcagtgcccagttgggtgtgtctttg 500

                                                                       
Query: 301 agggagtgtcaggagattaaatgaggaaagaaatgaggttcactccattccctggagtct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agggagtgtcaggagattaaatgaggaaagaaatgaggttcactccattccctggagtct 560

                                                                       
Query: 361 caggttgagtaagaaggatgtgagctgcaccttagtgttcgttcgcccctttctctgtgc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 caggttgagtaagaaggatgtgagctgcaccttagtgttcgttcgcccctttctctgtgc 620

                                                                       
Query: 421 ttcctgacgatgtaaccagccacccgagtttctactgtaggcctttcctgcacggtggac 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ttcctgacgatgtaaccagccacccgagtttctactgtaggcctttcctgcacggtggac 680

                                                                       
Query: 481 cacattctcctaaaacataaaataaacccctcttctcctgacttgtttttgccgagtatc 540
           |||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct: 681 cacattctcctaaaacataaaataaagccctcttctcctgacttgtttttgcctagtatc 740

                                                                     
Query: 541 atagcaaccagcgtaggatccaacacaccctggcattttgttactgaagcacaactga 598
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 741 atagcaaccagcgtaggatccaacacaccctggcattttgttaccgaagcacaactga 798


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 598
Length of database: 998
Length adjustment: 10
Effective length of query: 588
Effective length of database: 988
Effective search space:   580944
Effective search space used:   580944
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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