BAC Information

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BAC

Clone NameMSMg01-423D04
Chromosome9 (Build37)
Map Location 40,718,543 - 40,860,353
singlet/doubletdoublet
Overlap gene4931429I11Rik, Crtam, 2810457I06Rik
Upstream geneLOC100043015, Olfr974, Olfr975, Olfr976, Olfr977-ps1, Olfr978, Olfr979, Olfr980, Olfr981, 1700001J11Rik, Olfr982, Olfr983, Olfr984, Olfr985, 1700030E15Rik, LOC235279, Olfr986, Zfp202, Scn3b, Gramd1b, LOC270148, 9030425E11Rik, LOC100043076, LOC100043071, Hspa8, Bsx
Downstream geneLOC628495, LOC100042464, EG667566, 6720432D03Rik, Sorl1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-423D04.T7 (MSMg01no423_d04.b1)MSMg01-423D04.TJ (MSMg01no423_d04.g1)
ACCAG517410AG517411
length749742
length of high quality
(start - end)
536 (34 - 569)518 (65 - 582)
definitionCHROMAT_FILE: MSMg01no423_d04.b1 PHD_FILE: MSMg01no423_d04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:43:49 2005CHROMAT_FILE: MSMg01no423_d04.g1 PHD_FILE: MSMg01no423_d04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:43:49 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(40,859,821 - 40,860,353)(40,718,543 - 40,719,060)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTCTATGT
ACCAGACCAGGCTGACTTCTGCTTCCCCCAGTGTTGGATCAAAGATGTCT
GCCATCATACCCACTTCCCTCCACAGTTCTTACCCCCACTATAATCAGAT
AGTTAGCTTCTAGCTTCTGTCTTCCTGCCTACTGGATGGAATTCCACAGG
GACAGGGACCATGTGAGTTTTATTCCCTGCACCCAGAGTGGGAGCAGGAT
GTGAACCCAGATCTCTGTGGCTCTGACAGACCTGGCCTTGCAGGGCTCAC
TGTAGAGAGTCTCCTGTAGCTACTGGCCCATCAGGAGGGCTTTGAGCAGT
CTCGCCAGAAGTAACTGGTAGTAGCACCTCCTGGCTCTGTTTTTCCCCAA
AGATGTCTGTAAAATAATTAGTGATGATGGATCCCCCTGGGTCACTGGGC
ATGGAAAAAGAAGAGGAATCACTTCCTTTATGAGTTTATGCAAGTGTCCT
TGTAGCTATTTAGCACGGCATCTTCATGTCCTTCCTCACCCATTCCATCA
AGGGTGGTGAGTAAGAATCCGCTCAGCAGGGGATCTAGGGCATTGGGAAT
GAGTGGTTGAGAATTCAGGGAGAAAAAGCAAAGACATGACCACTTGTTAG
GAAATTGAAACTATAAACCGAATGGGGGAAACAACTGACAAATATCTGGC
GGCACCGTCTTAATGCCGCAGCGTTCCGGCAATTTTATTGTCCCATTTN
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXAGCGAAAACCGAGTGGTTTGGATAATTTGCTGTCGA
AGATGAGTTGAGATGTGCACCAAGAGGCATGTTTGATGCCGAGGAACCAG
TGGTGGAGGGTGAGAGACTGTGGCTTACACTCAGCCCCACTCTCTCTCCA
GATATGAAGACATGGGACTCAGTTTAGAAGTGGGGTTGGGGTGAGGAAAA
CTGATGGTTGAACTGAGGATAAAAGCAGGACTATTATTGCCTACCTGCAA
TGTAGACTCTTCCGAGAGCGGACATGAGAAGGAAGTAGGAGTATGTACCC
TTGGCAACAGAAACTTCTGGAAAGGTGGGGAGGGAAACTCAGGGAGTAGT
TTGGACTGGAGGGGAGGAGGGCTCTCAGTTCCTGGACCACCTTGCTGCGT
GAGAAGCTAAGTAATGACCAGCCCTATTCCAGGCCTATCTGTGTCACCAA
AATTCACGAGCGACTTGGCTGACAAGCATGCTTTTATCACCTTTGTGCTG
CTTCGCTTCCTGTGTCTCTTTCCTCTCTCCAGCTGAAGCAGGTAGTCTTC
CGAATTACTACGGGCCATCTTCACCTGGGGTCTGTGGCTTCTCTCTGAAT
GGACTTGTGATTCACTTTTTACCCTGGACAGGATATGTGCGCCTATGATC
TTGTTTCCTCACCCTCCCCTGGTTTGTTTCCCCCCCCCCTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no423_d04.b1 MSMg01no423_d04.b1 CHROMAT_FILE:
MSMg01no423_d04.b1 PHD_FILE: MSMg01no423_d04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:43:49 2005
         (536 letters)



>mm_chr9_40859429_40860364
          Length = 936

 Score = 1015 bits (525), Expect = 0.0
 Identities = 531/533 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattctctatgtaccagaccaggctgacttctgcttcccccagtgttggatcaaagat 63
           |||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 925 ggaattctctatgtagtagaccaggctgacttctgcttcccccagtgttggatcaaagat 866

                                                                       
Query: 64  gtctgccatcatacccacttccctccacagttcttacccccactataatcagatagttag 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 865 gtctgccatcatacccacttccctccacagttcttacccccactataatcagatagttag 806

                                                                       
Query: 124 cttctagcttctgtcttcctgcctactggatggaattccacagggacagggaccatgtga 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 cttctagcttctgtcttcctgcctactggatggaattccacagggacagggaccatgtga 746

                                                                       
Query: 184 gttttattccctgcacccagagtgggagcaggatgtgaacccagatctctgtggctctga 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 gttttattccctgcacccagagtgggagcaggatgtgaacccagatctctgtggctctga 686

                                                                       
Query: 244 cagacctggccttgcagggctcactgtagagagtctcctgtagctactggcccatcagga 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 cagacctggccttgcagggctcactgtagagagtctcctgtagctactggcccatcagga 626

                                                                       
Query: 304 gggctttgagcagtctcgccagaagtaactggtagtagcacctcctggctctgtttttcc 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 gggctttgagcagtctcgccagaagtaactggtagtagcacctcctggctctgtttttcc 566

                                                                       
Query: 364 ccaaagatgtctgtaaaataattagtgatgatggatccccctgggtcactgggcatggaa 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ccaaagatgtctgtaaaataattagtgatgatggatccccctgggtcactgggcatggaa 506

                                                                       
Query: 424 aaagaagaggaatcacttcctttatgagtttatgcaagtgtccttgtagctatttagcac 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 aaagaagaggaatcacttcctttatgagtttatgcaagtgtccttgtagctatttagcac 446

                                                                
Query: 484 ggcatcttcatgtccttcctcacccattccatcaagggtggtgagtaagaatc 536
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ggcatcttcatgtccttcctcacccattccatcaagggtggtgagtaagaatc 393


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 536
Length of database: 936
Length adjustment: 10
Effective length of query: 526
Effective length of database: 926
Effective search space:   487076
Effective search space used:   487076
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no423_d04.g1 MSMg01no423_d04.g1 CHROMAT_FILE:
MSMg01no423_d04.g1 PHD_FILE: MSMg01no423_d04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:43:49 2005
         (518 letters)



>mm_chr9_40718343_40719260
          Length = 918

 Score = 1002 bits (518), Expect = 0.0
 Identities = 518/518 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   agcgaaaaccgagtggtttggataatttgctgtcgaagatgagttgagatgtgcaccaag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agcgaaaaccgagtggtttggataatttgctgtcgaagatgagttgagatgtgcaccaag 260

                                                                       
Query: 61  aggcatgtttgatgccgaggaaccagtggtggagggtgagagactgtggcttacactcag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aggcatgtttgatgccgaggaaccagtggtggagggtgagagactgtggcttacactcag 320

                                                                       
Query: 121 ccccactctctctccagatatgaagacatgggactcagtttagaagtggggttggggtga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccccactctctctccagatatgaagacatgggactcagtttagaagtggggttggggtga 380

                                                                       
Query: 181 ggaaaactgatggttgaactgaggataaaagcaggactattattgcctacctgcaatgta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggaaaactgatggttgaactgaggataaaagcaggactattattgcctacctgcaatgta 440

                                                                       
Query: 241 gactcttccgagagcggacatgagaaggaagtaggagtatgtacccttggcaacagaaac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gactcttccgagagcggacatgagaaggaagtaggagtatgtacccttggcaacagaaac 500

                                                                       
Query: 301 ttctggaaaggtggggagggaaactcagggagtagtttggactggaggggaggagggctc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttctggaaaggtggggagggaaactcagggagtagtttggactggaggggaggagggctc 560

                                                                       
Query: 361 tcagttcctggaccaccttgctgcgtgagaagctaagtaatgaccagccctattccaggc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tcagttcctggaccaccttgctgcgtgagaagctaagtaatgaccagccctattccaggc 620

                                                                       
Query: 421 ctatctgtgtcaccaaaattcacgagcgacttggctgacaagcatgcttttatcaccttt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ctatctgtgtcaccaaaattcacgagcgacttggctgacaagcatgcttttatcaccttt 680

                                                 
Query: 481 gtgctgcttcgcttcctgtgtctctttcctctctccag 518
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gtgctgcttcgcttcctgtgtctctttcctctctccag 718


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 518
Length of database: 918
Length adjustment: 10
Effective length of query: 508
Effective length of database: 908
Effective search space:   461264
Effective search space used:   461264
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)