BAC Information

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BAC

Clone NameMSMg01-423F11
Chromosome9 (Build37)
Map Location 21,233,440 - 21,233,867
singlet/doubletsinglet
Overlap geneDnm2
Upstream geneZfp26, Zfp426, 5730601F06Rik, 7030419G21Rik, LOC100041205, 2210010B09Rik, 5730577I03Rik, Fbxl12, Ubl5, Pin1, Olfm2, Col5a3, Rdh8, A230050P20Rik, Angptl6, Ppan, Eif3s4, Dnmt1, Edg5, Mrpl4, Icam1, Icam4, Icam5, Glp1, B230118G17Rik, Raver1, Tyk2, Cdc37, Pde4a, Keap1, Edg8, Atg4d, BC021438, Cdkn2d, Ap1m2, Slc44a2, Ilf3, Qtrt1
Downstream geneTmed1, AB124611, Carm1, Yipf2, 1810026J23Rik, EG666043, Smarca4, Ldlr, Spc24, Ankrd25, Dock6, EG624219, Rab3d, BC010787, 2510048L02Rik, BC018242, 2310047B19Rik, Epor, Rgl3, C330001K17Rik, Prkcsh, Elavl3, Zfp653, Ecsit, EG625409, Cnn1, Elof1, Acp5, Pigyl, LOC100034724, 9530015I07Rik, 1810064F22Rik, Zfp809, BC050092, Zfp810, LOC100041826, EG625603, Anln, 9530077C05Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-423F11.T7 (MSMg01no423_f11.b1)MSMg01-423F11.TJ (MSMg01no423_f11.g1)
ACCAG517520AG517521
length742786
length of high quality
(start - end)
536 (35 - 570)172 (61 - 232)
definitionCHROMAT_FILE: MSMg01no423_f11.b1 PHD_FILE: MSMg01no423_f11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:44:00 2005CHROMAT_FILE: MSMg01no423_f11.g1 PHD_FILE: MSMg01no423_f11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:44:00 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCTGATC
TCCTGCCTCCACTTTCCAGCACCCGGTTTCTGTGCTGCTGGGCGTGGAAC
CCCCACTCATGCTAAGCACTTGCCAACTGAGCTGCAGTACTGGGCTCCCT
TTTTGTTTTTCTTTAAAAAAAATTTTTTTCCCGAACATTTCATTTATGTA
TCCTCTTTGGGCTTGTGTCTCCGTGTGCATACATCACACAGAAATTGCTT
CTCTGCTTCTACCATTGGAGTTCAGAAATCAACCCAGGTCATCAGGCTTG
GTGTTTTTTTCCCTTTCCCTACTGAGCCATCTTGCCAGCCTTCGTGAAAG
TCATAGACAAGTGGGACTCGGCCTCAGTGACATGCACCAGGTGACGCTGT
AAGGCAGTCAAACACTCAAGGAACAAACTGTAACCCCACTTCCTTCTGAG
ATTCCGATTCAGAAAGGCAATACATTCACAGGAAGGAGTCTAGCCTCCGC
TTTCCAGGCTGGAACCCCAACTTCCTGGGTTCCTGTCCAAATGGGGGTGG
GGTAGGGGAAAAAAGCCCAGCTAGTCTCTTTGCCAGCCCCCTTATTAAAT
TAGAACGATTAGGTAGATAACCAGCCCTCCCGAGAGTTCTTTTTAGCTCC
CAAAGCCGGTTGGTTCACAAGTCTGGTTTAAATGCTAATCTTTTCTAAAT
GGTAAAACACCCCTGTTTTCAAATATCATCCATTTTTCTTTN
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXCAGAACTTGGGAGGTTGAAGCAGGATTTTGAGATATAGTA
CCCAGTCTGGGATACATAGTGAGTTTCAGGCCAGTTAGAGATAAGTGTGT
GAGTGTGTGTGTGTGTGTGTGTAGTGTGTGTATATTTTTGACATATATGT
ATGTATGTGTACCTATATATGTATATGTCATTTTTTTATATCTTAATTGA
TGCCTGCCTGCACACATAGTAAGTGCTTAGAGGACCGCAGCAAAAACTTT
AGCTCCTTTTCACCCCCCAAAACGCAAATAACCGAGGCCTATTTTTTTTC
CTCCTCTTTCGTAGTTTGAGGCTGTTCTGCCTTTTGTTATTCCCCTTCTT
TTCTTTTTCTTCTTCGTCCCCCCCCTCATTTTTTTTCCTCCTCCCCTCAC
ACTTTTCTTCCTTTTCCATTTCTTCCCCTTTTCCATTTTTTCTTCCTCTT
CTTTTCCCCCTTCCCTCCCCTTTCCCTCTCTTCCCCCCTTCTTCCTTTCC
CCCCTTTTTTATTTTTTTCCTCTCTCCCCCCCTTTCCTTTTATTTCTCCC
CTCCCCTTTTTTCCTTTTCTCCCACTTCTTTCTCTTTTCCTTACAATTTT
TTCTCCCTTCCCTCCTCCCTCTCTTTTTTTTTTTTTTCCCTTCCCTCCCT
CATCCCTTTCTTTTTATTTTCCTCTTCCCCCCCTTTTTCCCCCTCCTCTT
CCCTTTTTTTCCCTTATCCCTCCCCTCTTTCTTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no423_f11.b1 MSMg01no423_f11.b1 CHROMAT_FILE:
MSMg01no423_f11.b1 PHD_FILE: MSMg01no423_f11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:44:00 2005
         (536 letters)



>mm_chr9_21232934_21233869
          Length = 936

 Score =  770 bits (398), Expect = 0.0
 Identities = 421/436 (96%), Gaps = 14/436 (3%)
 Strand = Plus / Minus

                                                                       
Query: 107 tgggctccctttttgtttttctttaaaaaaaatttttttcccgaacatttcatttatgta 166
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 934 tgggctccctttttgtttttcttt-aaaaaaatttttttcccgaacatttcatttatgta 876

                                                                       
Query: 167 tcctctttgggcttgtgtctccgtgtgcatacatcacacagaaattgcttctctgcttct 226
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 875 tcctctttgggcttgtgtctccgtgtgcatacatcacacagaaattgcttctctgcttct 816

                                                                       
Query: 227 accattggagttcagaaatcaacccaggtcatcaggcttggtg------tttttttccct 280
           |||||||||||||||||||||||||||||||||||||||||||             ||||
Sbjct: 815 accattggagttcagaaatcaacccaggtcatcaggcttggtggcaaac-------ccct 763

                                                                       
Query: 281 ttccctactgagccatcttgccagccttcgtgaaagtcatagacaagtgggactcggcct 340
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 762 ttccctactgagccatcttgccagccttcgtgaaagtcatagacaagtgggactcggcct 703

                                                                       
Query: 341 cagtgacatgcaccaggtgacgctgtaaggcagtcaaacactcaaggaacaaactgtaac 400
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 702 cagtgacatgcaccaggtaacgctgtaaggcagtcaaacactcaaggaacaaactgtaac 643

                                                                       
Query: 401 cccacttccttctgagattccgattcagaaaggcaatacattcacaggaaggagtctagc 460
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 642 cccacttccttctgagattccgattcagaaaggcaatacattcacaggaaggagtctagc 583

                                                                       
Query: 461 ctccgctttccaggctggaaccccaacttcctgggttcctgtccaaatgggggtggggta 520
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 582 ctccgctttccaggctggaaccccaacttcctgggttcctgtccaaatgggggtggggta 523

                           
Query: 521 ggggaaaaaagcccag 536
           ||||||||||||||||
Sbjct: 522 ggggaaaaaagcccag 507


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 536
Length of database: 936
Length adjustment: 10
Effective length of query: 526
Effective length of database: 926
Effective search space:   487076
Effective search space used:   487076
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)