BAC Information

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BAC

Clone NameMSMg01-423J09
Chromosome9 (Build37)
Map Location 69,833,602 - 69,990,155
singlet/doubletdoublet
Overlap geneBnip2, LOC624164, Gtf2a2, Gcnt3, 6430514L14Rik
Upstream geneRora, Narg2, EG665815, EG244913, Anxa2, Foxb1
Downstream geneMyo1e, Ccnb2, Rnf111, Sltm, B230380D07Rik, Adam10, Cycs-ps1, Lipc, LOC100041622, LOC100041628, Aqp9
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-423J09.T7 (MSMg01no423_j09.b1)MSMg01-423J09.TJ (MSMg01no423_j09.g1)
ACCAG517707AG517708
length783756
length of high quality
(start - end)
231 (65 - 295)386 (65 - 450)
definitionCHROMAT_FILE: MSMg01no423_j09.b1 PHD_FILE: MSMg01no423_j09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:44:18 2005CHROMAT_FILE: MSMg01no423_j09.g1 PHD_FILE: MSMg01no423_j09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:44:18 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(69,833,602 - 69,833,832)(69,989,770 - 69,990,155)
sequence
GCGGCCGCTATACGACTCACATACTCAAGAGGATCCGCGGAATTCCCATT
GCCCCTCTGTAGACAACTTGTCTCCCTGAGAAACTTTCCTCCTCTAATGG
ATAACCCTGACTTTGTCATATGCAAGGCAGGCTGTACAAAATCAGAGAAA
GCTGCGTGACAATATTCTTTTTTTAAAGGGTTTATTCTCTTGTTGCACTT
TATGTATATTTTAGAACCCTGGAAAAGGTGCTCCTTGTCTTTCCCTCCTG
TGTGCTTTCATTCTGCTTCTTCACGGCCCATGAGGCCAGCTAAGGTCGCC
AGTTTAATAATTTCAAACCTACGAGATGGGAGCAGATCACTCGGTCATTT
CCCCAACTCTTCGAGCTGCCCATCATATCTGAGGCTGACCCCTCTATGCT
TGTCTAACCTGCCCGTGTACTTTTATATGTTGCATTCATTTCCGCGATAT
CCCTGACCCCCACTTGTTTATTGCCCTTCCTCCCCTTTATTGTTCTTCCC
GGTCTTTTCCCTTCCTTACATCTTTTTCCCCTTATTTTCTTACCTTCTTT
TTATTGTTCCCCTTCAACCCCACCTTTTTTTTTTTTCCCCCCTCTTTTTT
CCTTCCATCCTTTTTACCATTCTTTCCTCCTCTTCCTACCTCCTTTTCTT
TTTTTTTCTATTCCCCCCCCCTCTTATTATTCCCCCTTCCCCTCTTTCTT
TTTCTTTTTCTTCCTTTCCCCTTTATTCTCTTCATTCCTCCATCCTTTTC
CTTTTTCTCTTTAACCCTCCTTTTTTATTATTA
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXCAAGACCAGAGCTTTCCCAAGTGGCTGCACAGCCTG
CGTTCTTCCTATCTTCCTTTGAATTGGGGGCAGAGGAGAGCCGCCAGACA
GGAGCACCTACACTGGGTAAGCCCATGCCTCTACGTAAGAGCTATGAACC
AGACGCAGTGAGGTGAGCAAAGGTGGGATCCTCCACTCTTCTTAAACCCC
ACCTTACGGAGAGGAAGCAAAATTGTGAGTGATTCCTGCTGAGGATCCAG
CACTGATGTGTTTGAGAGCAAAGCTGGAACTCCCTGGGAGCGAGGCAGAA
GGTAGGAAGAGGGCTGGGAGGAGAAACGGGCATTTTCCCAGGGGTCCTGT
CTCTTGTGCGCGAGGCTTGGCGATTCCCTCATATACACTTGTCGCCTGGA
GGGTTCCATCATCTGTGCAGGTGTGGTGTTGTAAGTATTTGTTTCCTGGA
CCGCGGTTTCACCCCTAACCTCTCCCTTGTTCGAGGTGTGATAAGTACTT
CTCTACTCCTTGCGTTATCTTCGCCTCGCTATTTAATTTTTGCTATCCTC
TCCCGTTAACTTCCTTGTTTGTCTTCTCCCTTCCTCGCCCGCTGTCTTTT
TTTTTTTTACTTTCCTCCTTCTTCTCTTTTCTTTTGTTATCCTATCCTCC
GCTTTTATTCCTCGCTTTCTACGTTTTTTCCTCTACTCCTTCCCTCCTGT
TTCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no423_j09.b1 MSMg01no423_j09.b1 CHROMAT_FILE:
MSMg01no423_j09.b1 PHD_FILE: MSMg01no423_j09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:44:18 2005
         (231 letters)



>mm_chr9_69833402_69834032
          Length = 631

 Score =  431 bits (223), Expect = e-125
 Identities = 229/231 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aacttgtctccctgagaaactttcctcctctaatggataaccctgactttgtcatatgca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aacttgtctccctgagaaactttcctcctctaatggataaccctgactttgtcatatgca 260

                                                                       
Query: 61  aggcaggctgtacaaaatcagagaaagctgcgtgacaatattctttttttaaagggttta 120
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 261 aggcaggctgtacaaaatcagagaaagctgtgtgacaatattctttttttaaagggttta 320

                                                                       
Query: 121 ttctcttgttgcactttatgtatattttagaaccctggaaaaggtgctccttgtctttcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 321 ttctcttgttgcactttatgtatattttagaaccctggaaaaggtgctccttggctttcc 380

                                                              
Query: 181 ctcctgtgtgctttcattctgcttcttcacggcccatgaggccagctaagg 231
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctcctgtgtgctttcattctgcttcttcacggcccatgaggccagctaagg 431


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 231
Length of database: 631
Length adjustment: 9
Effective length of query: 222
Effective length of database: 622
Effective search space:   138084
Effective search space used:   138084
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no423_j09.g1 MSMg01no423_j09.g1 CHROMAT_FILE:
MSMg01no423_j09.g1 PHD_FILE: MSMg01no423_j09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:44:18 2005
         (386 letters)



>mm_chr9_69989570_69990355
          Length = 786

 Score =  692 bits (358), Expect = 0.0
 Identities = 379/386 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   caagaccagagctttcccaagtggctgcacagcctgcgttcttcctatcttcctttgaat 60
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 586 caagaccagagctttcccaagtggctgcacagcctgcgttcttcctagcttcctttgaat 527

                                                                       
Query: 61  tgggggcagaggagagccgccagacaggagcacctacactgggtaagcccatgcctctac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 526 tgggggcagaggagagccgccagacaggagcacctacactgggtaagcccatgcctctac 467

                                                                       
Query: 121 gtaagagctatgaaccagacgcagtgaggtgagcaaaggtgggatcctccactcttctta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 466 gtaagagctatgaaccagacgcagtgaggtgagcaaaggtgggatcctccactcttctta 407

                                                                       
Query: 181 aaccccaccttacggagaggaagcaaaattgtgagtgattcctgctgaggatccagcact 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 406 aaccccaccttacggagaggaagcaaaattgtgagtgattcctgctgaggatccagcact 347

                                                                       
Query: 241 gatgtgtttgagagcaaagctggaactccctgggagcgaggcagaaggtaggaagagggc 300
           |||| |   |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 346 gatgggaaggagagcaaagctggaactccctgggagcgaggcagaaggtaggaagagggc 287

                                                                       
Query: 301 tgggaggagaaacgggcattttcccaggggtcctgtctcttgtgcgcgaggcttggcgat 360
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 286 tgggaggagaaacgggcattttcccaggggtcctgtctcttgtgcgcgaggcttggtgat 227

                                     
Query: 361 tccctcatatacacttgtcgcctgga 386
           ||||||||| ||||||||||||||||
Sbjct: 226 tccctcatacacacttgtcgcctgga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 386
Length of database: 786
Length adjustment: 9
Effective length of query: 377
Effective length of database: 777
Effective search space:   292929
Effective search space used:   292929
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)