BAC Information

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BAC

Clone NameMSMg01-423L12
Chromosome9 (Build37)
Map Location 118,076,645 - 118,076,956
singlet/doubletsinglet
Overlap genenone
Upstream geneRbms3, LOC665840, LOC100039650, LOC100039681, Azi2, 2010110K16Rik
Downstream geneEomes, Golga4, Itga9, LOC100039768, Ctdspl, Vill, Plcd1, Dlec1, Acaa1b, EG546165
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-423L12.T7 (MSMg01no423_l12.b1)MSMg01-423L12.TJ (MSMg01no423_l12.g1)
ACCAG517809AG517810
length741736
length of high quality
(start - end)
474 (56 - 529)491 (65 - 555)
definitionCHROMAT_FILE: MSMg01no423_l12.b1 PHD_FILE: MSMg01no423_l12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:44:28 2005CHROMAT_FILE: MSMg01no423_l12.g1 PHD_FILE: MSMg01no423_l12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:44:28 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTAAATT
ACAGCACAACAGACCCAAGAGGCCATTGACAGTGGTGACAAGGGCCAGCA
CAATGCTGAGGAGGGTTCTGTTTGAGGAGGATGAAAAGGGCACCTTTGTC
ATTTGTGGCATAGTTTGGCAGCGAGGCTGTCTGTGGTAACCTAGGGAACA
GAAGCAACGGCGACTTAAAGCACTCGGAGACTTGGCTGTAGAGGTGCACA
CACAAAGTGTAGACAGTGCCAGCTGGTGGCTTCTTCTAACCATGACTTCT
TAACTTCTTGAAAAAGTTGAAAGAGAAAGCAACTGTGAGGTTGTGAGTCA
AATTTAGAGGAAATAGAAAATCTTGACTTCATAGGCTTGAAGATAAAACT
TTTTCTTTCTAGTGTCTGTTTCGGTATCTCATTATCTATATAATTCTCTG
TCTCTGTCTTTGTCGTGTGCTTAATAAACAGGAAGATCAAATGTTGTACT
TTCACTTATTTCCTTAAGGCTCCCAATGCCAAAGTCAAGCGTGCATGTTT
TATTGTTGTTGTTAAGGAGAAACCTCTTTCTATATACCCTATCTGCTCTA
AAACTCTATCATGGGACCAGACTTGTACTTTTGTTGGCTGAGACCTTGAA
AATCTTGCTTTCAACCATACCCTATATTCTGCCCCTTTGGGACCATGCCC
TTTTTACTTCTGTAGATATACGTGTTTTTCTTCCGCATTTN
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXTTTGTTCAGTTCTGAGCCCCATTTTTTAATGGGGTT
ATTTGATTTTCTGAAGTCCACCTTCTTGAGTTCTTTATATATGTTGGATA
TTAGTCCCCTATCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTT
GGTGGTCTTTTTGTCTTATTGACGGTATCTTTTACCTTGCAGAAGCTTTG
GAGTTTCATGAGGTCCCATTTGTCAATTCTCGATCTTACAGCACAAGCCA
TTGCTGTTCTATTCAGGAATTTTTCCCCTGTGCCCATATCTTCAAGGCTT
TTCCCCACTTTCTCCTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGAAA
TTCCTTGATCCACTTAGATTTGACCTTAGTACAAGGAGATAAGTATGGAT
CGATTCGCATTCTTCTACATGATAACAACCAGTTGTTTCAGCACCAATTG
TTGAAAATGCTGTCTTTCTTCCACTGGATGGGTTTGAAGTTCCTAGTCTT
AAGTGAGTCACGCTGAACTATCTGTCTTTTGCCCATGGATATCCCGTTTT
CCCAGCACCAGTTTCTTCTCCCATCTAAAGTCTTGACACTTGATAGAAGA
AGGAGGNGGGTGTACAATCCTGTTTTCTGTGTCCGCTGTTTTATTGTATA
CTAATTTGCTTTTTTTTTTGTTTTCCCCCCCTCCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no423_l12.b1 MSMg01no423_l12.b1 CHROMAT_FILE:
MSMg01no423_l12.b1 PHD_FILE: MSMg01no423_l12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:44:28 2005
         (474 letters)



>mm_chr9_118076083_118076956
          Length = 874

 Score =  588 bits (304), Expect = e-172
 Identities = 310/312 (99%)
 Strand = Plus / Minus

                                                                       
Query: 163 aagcactcggagacttggctgtagaggtgcacacacaaagtgtagacagtgccagctggt 222
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 874 aagcactcggagacttggctgtagaggtgcacacacaaagtgtagacagtgccagctggt 815

                                                                       
Query: 223 ggcttcttctaaccatgacttcttaacttcttgaaaaagttgaaagagaaagcaactgtg 282
           ||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||
Sbjct: 814 ggcttcttctaaccatgacttcttaacttcaagaaaaagttgaaagagaaagcaactgtg 755

                                                                       
Query: 283 aggttgtgagtcaaatttagaggaaatagaaaatcttgacttcataggcttgaagataaa 342
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 754 aggttgtgagtcaaatttagaggaaatagaaaatcttgacttcataggcttgaagataaa 695

                                                                       
Query: 343 actttttctttctagtgtctgtttcggtatctcattatctatataattctctgtctctgt 402
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 694 actttttctttctagtgtctgtttcggtatctcattatctatataattctctgtctctgt 635

                                                                       
Query: 403 ctttgtcgtgtgcttaataaacaggaagatcaaatgttgtactttcacttatttccttaa 462
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 634 ctttgtcgtgtgcttaataaacaggaagatcaaatgttgtactttcacttatttccttaa 575

                       
Query: 463 ggctcccaatgc 474
           ||||||||||||
Sbjct: 574 ggctcccaatgc 563


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 474
Length of database: 874
Length adjustment: 10
Effective length of query: 464
Effective length of database: 864
Effective search space:   400896
Effective search space used:   400896
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)