BAC Information

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BAC

Clone NameMSMg01-424F16
Chromosome9 (Build37)
Map Location 93,483,660 - 93,690,890
singlet/doubletdoublet
Overlap geneLOC674371
Upstream genePlod2, LOC100039921, LOC100039931, LOC100039944, LOC667009, LOC100040114
Downstream geneLOC384967, EG384968, 1190002N15Rik, EG667601, Slc9a9
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-424F16.T7 (MSMg01no424_f16.b1)MSMg01-424F16.TJ (MSMg01no424_f16.g1)
ACCAG518293AG518294
length752754
length of high quality
(start - end)		611 (66 - 676)606 (76 - 681)
definitionCHROMAT_FILE: MSMg01no424_f16.b1 PHD_FILE: MSMg01no424_f16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:45:17 2005CHROMAT_FILE: MSMg01no424_f16.g1 PHD_FILE: MSMg01no424_f16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:45:18 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(93,483,660 - 93,484,270)(93,690,285 - 93,690,890)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCATCAGTTTGCCCTTTCTGCTCTAATGCTATAAGGCAAACATGTTT
GAAACAATCAACACAAGATTTTGTCCCACTTCTGTTTCTTCTCCCTTCCC
TTGTCTGTGAAGCCCACTCCCTTAGCTCTCCTTGACAGAATACCTTCCCA
AACCTTAGCAGGGGACACAGCCACATTTCATCAACTGCCAGGAGAACAAA
TTGGAGTGTGATTTTGTTTGAACTTTTGCTTTGTTAACATCACAGCAGGA
CAGCAATATTTAAATGTTTGGTGTCTATTTGTACAGAAAGACAATAATAC
AGAGAGATAATTATAGCATAGTAGTGTATTTAAAGGCAGTGTGTGCTATC
ATGAACTAAAACAGAGATGAGTGATCAAATACTTAAGGAGGCACATCAAG
TTGATGCATGAGAGAATGAAAGCAGATCCACTATCCTGAAAGGGTTAACA
TGGGAAAATTGTTTGAAAAACAACAGTAAACAGTGACTGGAACTGAAGAA
GTGGAAGGAAAAGAGCAGTTGAGAGGACAGAGCCTTAGGAAGGTCATTGT
ACTGGAGACTGTGGATTATTCTCAGTGAAATCAGTAACATTTCCAAGTAG
GTATAAGTATTTAGAATATAATTACACATTATATTATGCTTAGGAAAATG
GTAGTAGTTTTTTTTTCCTTAAGGGCTATGAACTCTTTTAGCCTGTATAT
AA

CCGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCATATAATCCTTATCAGCATGATGT
AATCACTTTTTTCATGTAATGCTTGAATTACATTAGTCTGTTGTTTTTGG
CCTATTGCTTAAGTTTATTTTTGCATATGAATCTCAAAATTATATATTAA
ATTCTGAGATCATTCTAAAATTACAAACATGCTCACTACAAATAGCTTAC
CAAGATATTTTTATATATTGTTGAATTAGAATGTCAAAGAAAAGTCTTAC
ATTTGACTTAATATTTAAGGTCTTTTTGCATTTAATTTGGTAGCAACAGC
TATTATAGGATTGTATACTTCCATTTTCTTCTAAGGTGCCCACAACAATC
TTTGTACACCCATGTCTGGGTAGAATAGAGTGGAATATAAGCTGGCTACA
CATATGCTAAATTTCTGTGAGCTCTAATACAGAACATGCATTTCAATGTG
GAATGAACAGGAACAATATGCCATTAAAAACCATGTTTATATCTTAAATG
TTACTTGGCTAGACACTGTCTTGAAGAGCTTCTGGCAGAAGAACGGAGTG
TAAAGAGTTTAGAATCAACAGCAAAGCCAAGCACATGTAGAAATATGAAG
GACAGTAAGAGTGATAAGTGAAAGGACTAACAGTTTAGTCAATGTAATAC
TGTTACCAAGCATTACTGAGGTCTCAACACTGATCCTTCATGAAGATTTG
CATN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no424_f16.b1 MSMg01no424_f16.b1 CHROMAT_FILE:
MSMg01no424_f16.b1 PHD_FILE: MSMg01no424_f16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:45:17 2005
         (611 letters)



>mm_chr9_93483460_93484470
          Length = 1011

 Score = 1151 bits (595), Expect = 0.0
 Identities = 607/611 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cctttctgctctaatgctataaggcaaacatgtttgaaacaatcaacacaagattttgtc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cctttctgctctaatgctataaggcaaacatgtttgaaacaatcaacacaagattttgtc 260

                                                                       
Query: 61  ccacttctgtttcttctcccttcccttgtctgtgaagcccactcccttagctctccttga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccacttctgtttcttctcccttcccttgtctgtgaagcccactcccttagctctccttga 320

                                                                       
Query: 121 cagaataccttcccaaaccttagcaggggacacagccacatttcatcaactgccaggaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 321 cagaataccttcccaaaccttagcaggggacacagccacatttcatcaattgccaggaga 380

                                                                       
Query: 181 acaaattggagtgtgattttgtttgaacttttgctttgttaacatcacagcaggacagca 240
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 381 acaaattggagtgtgattttgtttgaacttttactttgttaacatcacagcaggacagca 440

                                                                       
Query: 241 atatttaaatgtttggtgtctatttgtacagaaagacaataatacagagagataattata 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atatttaaatgtttggtgtctatttgtacagaaagacaataatacagagagataattata 500

                                                                       
Query: 301 gcatagtagtgtatttaaaggcagtgtgtgctatcatgaactaaaacagagatgagtgat 360
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 501 gcatagtagtgtatttaaaggcagtgtgtgatatcatgaactaaaacagagatgagtgat 560

                                                                       
Query: 361 caaatacttaaggaggcacatcaagttgatgcatgagagaatgaaagcagatccactatc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 caaatacttaaggaggcacatcaagttgatgcatgagagaatgaaagcagatccactatc 620

                                                                       
Query: 421 ctgaaagggttaacatgggaaaattgtttgaaaaacaacagtaaacagtgactggaactg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ctgaaagggttaacatgggaaaattgtttgaaaaacaacagtaaacagtgactggaactg 680

                                                                       
Query: 481 aagaagtggaaggaaaagagcagttgagaggacagagccttaggaaggtcattgtactgg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aagaagtggaaggaaaagagcagttgagaggacagagccttaggaaggtcattgtactgg 740

                                                                       
Query: 541 agactgtggattattctcagtgaaatcagtaacatttccaagtaggtataagtatttaga 600
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 741 agactgtggattattctcagtgaaatcagtaacacttccaagtaggtataagtatttaga 800

                      
Query: 601 atataattaca 611
           |||||||||||
Sbjct: 801 atataattaca 811


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 611
Length of database: 1011
Length adjustment: 10
Effective length of query: 601
Effective length of database: 1001
Effective search space:   601601
Effective search space used:   601601
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no424_f16.g1 MSMg01no424_f16.g1 CHROMAT_FILE:
MSMg01no424_f16.g1 PHD_FILE: MSMg01no424_f16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:45:18 2005
         (606 letters)



>mm_chr9_93690085_93691090
          Length = 1006

 Score = 1141 bits (590), Expect = 0.0
 Identities = 602/606 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   catataatccttatcagcatgatgtaatcacttttttcatgtaatgcttgaattacatta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 806 catataatccttatcagcatgatgtaatcacttttttcatgtaatgcttgaattacatta 747

                                                                       
Query: 61  gtctgttgtttttggcctattgcttaagtttatttttgcatatgaatctcaaaattatat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 746 gtctgttgtttttggcctattgcttaagtttatttttgcatatgaatctcaaaattatat 687

                                                                       
Query: 121 attaaattctgagatcattctaaaattacaaacatgctcactacaaatagcttaccaaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 686 attaaattctgagatcattctaaaattacaaacatgctcactacaaatagcttaccaaga 627

                                                                       
Query: 181 tatttttatatattgttgaattagaatgtcaaagaaaagtcttacatttgacttaatatt 240
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 626 tatttttatatattgttgaattagaatgtcaaagaaaagtctaacatttgacttaatatt 567

                                                                       
Query: 241 taaggtctttttgcatttaatttggtagcaacagctattataggattgtatacttccatt 300
           |||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 taaggtcaatttgcatttaatttggtagcaacagctattataggattgtatacttccatt 507

                                                                       
Query: 301 ttcttctaaggtgcccacaacaatctttgtacacccatgtctgggtagaatagagtggaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 ttcttctaaggtgcccacaacaatctttgtacacccatgtctgggtagaatagagtggaa 447

                                                                       
Query: 361 tataagctggctacacatatgctaaatttctgtgagctctaatacagaacatgcatttca 420
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 446 tataagctggctacacatatgctaaatttctctgagctctaatacagaacatgcatttca 387

                                                                       
Query: 421 atgtggaatgaacaggaacaatatgccattaaaaaccatgtttatatcttaaatgttact 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 atgtggaatgaacaggaacaatatgccattaaaaaccatgtttatatcttaaatgttact 327

                                                                       
Query: 481 tggctagacactgtcttgaagagcttctggcagaagaacggagtgtaaagagtttagaat 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 tggctagacactgtcttgaagagcttctggcagaagaacggagtgtaaagagtttagaat 267

                                                                       
Query: 541 caacagcaaagccaagcacatgtagaaatatgaaggacagtaagagtgataagtgaaagg 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 caacagcaaagccaagcacatgtagaaatatgaaggacagtaagagtgataagtgaaagg 207

                 
Query: 601 actaac 606
           ||||||
Sbjct: 206 actaac 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 606
Length of database: 1006
Length adjustment: 10
Effective length of query: 596
Effective length of database: 996
Effective search space:   593616
Effective search space used:   593616
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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