Query= MSMg01no424_k05.b1 MSMg01no424_k05.b1 CHROMAT_FILE:
MSMg01no424_k05.b1 PHD_FILE: MSMg01no424_k05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:45:38 2005
(406 letters)
>mm_chr9_54514124_54514930
Length = 807
Score = 679 bits (351), Expect = 0.0
Identities = 394/413 (95%), Gaps = 11/413 (2%)
Strand = Plus / Plus
Query: 5 gaattctctgttgttcacactgcctgctttttgttttt--------acactctatactgg 56
||||||||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct: 197 gaattctctgtggttcacactgcctgctttttgtttttttgtttttacactctatactgg 256
Query: 57 atcacatgctggatctatatacggattgtttacctgcaaggtattttctaaatattgtca 116
|||||||||||| |||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct: 257 atcacatgctgggtctatatatggattgtttacctgcaaagtattttctaaatattgtca 316
Query: 117 tgcttgtgtgtcttgtgtcagtgtgtgtataatttaagattttcagtagagccttcattt 176
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 tgcttgtgtgccttgtgtcagtgtgtgtataatttaagattttcagtagagccttcattt 376
Query: 177 gccaggctatatgaagatgatcacctaatgccatcacctggctattgttatcgaagaaaa 236
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 377 gccaggctatatgaagatgatcacctaatgccatcacctggctattgctatcgaagaaaa 436
Query: 237 tactttaaaaaaacaaaa-ccatttttttttgtcttcgtaaacatctttaaatgcttgca 295
|||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 tactttaaaaaaccaaaaaccatttttttttgtcttcgtaaacatctttaaatgcttgca 496
Query: 296 ggttaaaattgagtataactcatcctttcaaaaatttagaatgtaaataatagatgccca 355
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 497 ggttaaaattgagtataactcatcctttcaaaaatttagaatgtaaataatagacgccca 556
Query: 356 gaatacatttttaatgtg-tgtg-gtgtgtgtgtgtgtgtgtgtgtgtgtgtg 406
|||||||||||||||||| |||| |||||||||||||||||||||||||||||
Sbjct: 557 gaatacatttttaatgtggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg 609
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 61
Number of extensions: 12
Number of successful extensions: 12
Number of sequences better than 10.0: 1
Number of HSP's gapped: 6
Number of HSP's successfully gapped: 1
Length of query: 406
Length of database: 807
Length adjustment: 9
Effective length of query: 397
Effective length of database: 798
Effective search space: 316806
Effective search space used: 316806
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no424_k05.g1 MSMg01no424_k05.g1 CHROMAT_FILE:
MSMg01no424_k05.g1 PHD_FILE: MSMg01no424_k05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:45:38 2005
(408 letters)
>mm_chr9_54647171_54647978
Length = 808
Score = 758 bits (392), Expect = 0.0
Identities = 404/408 (99%)
Strand = Plus / Minus
Query: 1 accctagtcaggccagagaagaaaaagctgagtttattttatacattgtaacagtgtggg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 accctagtcaggccagagaagaaaaagctgagtttattttatacattgtaacagtgtggg 549
Query: 61 ggaccaaggcaggaataaaggtatagaagtagatgggctatggtggcttttcctgaggtt 120
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 548 ggaccaaggcaggaataaaggtacagaagtagatgggctatggtggcttttcctgaggtt 489
Query: 121 cctgacatgcaattcctactgtgcaaatgagggcagtcctgacttattgatgttggggtc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 cctgacatgcaattcctactgtgcaaatgagggcagtcctgacttattgatgttggggtc 429
Query: 181 ttggttgacagggtgacagttttgatactcagtcgtgtttgattttgagcggttatgctc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 ttggttgacagggtgacagttttgatactcagtcgtgtttgattttgagcggttatgctc 369
Query: 241 agtcatgctatccctccagtatggtttggctaaacatgagttgttgtgttttgtagtatt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 368 agtcatgctatccctccagtatggtttggctaaacatgagttgttgtgttttgcagtatt 309
Query: 301 atcagggatgcttcctggacaagacttgtactgtgtaaattccctgaaactgactctctc 360
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 atcagggatgcttcccggacaagacttgtactgtgtaaattccctgaaactgactctctc 249
Query: 361 tgtttctggtctctgtcccacagtcactactgacaaagaaacaaactc 408
||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 248 tgtttctggcctctgtcccacagtcactactgacaaagaaacaaactc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 408
Length of database: 808
Length adjustment: 9
Effective length of query: 399
Effective length of database: 799
Effective search space: 318801
Effective search space used: 318801
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
