Query= MSMg01no424_k20.b1 MSMg01no424_k20.b1 CHROMAT_FILE:
MSMg01no424_k20.b1 PHD_FILE: MSMg01no424_k20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:45:41 2005
(590 letters)
>mm_chr9_20273432_20274420
Length = 989
Score = 1006 bits (520), Expect = 0.0
Identities = 548/558 (98%), Gaps = 5/558 (0%)
Strand = Plus / Minus
Query: 34 gaagcaatgtgaggaagcccttgtttgtgctcatgtactttgaagacatgatggtactca 93
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 989 gaagcaatgtgaggaagcccttgtttgtgctcatgtactttgaagacatgatggtactca 930
Query: 94 cactggnggagaaactatgaaaattagatacttagcttagagcagtgctgtgttgccata 153
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 929 cactgg-ggagaaactatgaaaattagatacttagcttagagcagtgctgtgttgccata 871
Query: 154 ctgagcaacacaaatactccatgtcaaaaaaaattaaagtggatgctgacaagatagctc 213
||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||
Sbjct: 870 ctgagcaacacaaatactccatgtc-aaaaaaattaaagtggatgctggcaagatagctc 812
Query: 214 agtgggtaaaagcacttgatgggaatgtctgacagcttgaatctgacccacactcacgta 273
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 811 agtgggtaaaagcacttgatggaaatgtctgacagcttgaatctgacccacactcacgta 752
Query: 274 tatcagacagatgtagtggcatgcatctgtattctcagcattcctacaagatcacctgca 333
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 751 aatcagacagatgtagtggcatgcatctgtattctcagcattcctacaagatcacctgca 692
Query: 334 accttgcaggccagctagtttatgtagcatggcagagaggaagactgactcaacaaggta 393
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 691 accttgcaggccagctagtttatgtagcatggcagagaggaagactgactcaacaaggta 632
Query: 394 gaagatttaatgccttaaagttgacctctgatctccatgtgtctgcccaccctcctacat 453
||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||
Sbjct: 631 gaagatttaatgccttaaagttgacctctcatctccatgtttctgcccaccctcctacat 572
Query: 454 ataccacagtaat-aaaaaaaatgttttttttcaaacaaaagcattctccatacactcct 512
||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 571 ataccacagtaataaaaaaaaatg--ttttttcaaacaaaagcattctccatacactcct 514
Query: 513 gactacccattttctatccctgaatcccacattgtaaagagagaattggctcctaaaaag 572
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 513 gactacccattttctatccctgaatcccacattgtaaagagagaattggctcctaaaaag 454
Query: 573 ctgccctctgacctccac 590
||||||||||||||||||
Sbjct: 453 ctgccctctgacctccac 436
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 5
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 590
Length of database: 989
Length adjustment: 10
Effective length of query: 580
Effective length of database: 979
Effective search space: 567820
Effective search space used: 567820
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no424_k20.g1 MSMg01no424_k20.g1 CHROMAT_FILE:
MSMg01no424_k20.g1 PHD_FILE: MSMg01no424_k20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:45:41 2005
(573 letters)
>mm_chr9_20119068_20120040
Length = 973
Score = 965 bits (499), Expect = 0.0
Identities = 556/575 (96%), Gaps = 3/575 (0%)
Strand = Plus / Plus
Query: 1 tgagatacgggttatattttgctcttctattttgcttggacacctttcaaaaacaaatga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 200 tgagatacgggttatattttgctcttctattttgcttggacacctttcaaaaacaaatga 259
Query: 61 gaagattgaaaaataaataaataaaccagtacccaacagtgcctctgaattttcagt-aa 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 260 gaagattgaaaaataaataaataaaccagtacccaacagtgcctctgaattttcagtgaa 319
Query: 120 aagcagtttactgataaagtccacacattaattctaagagtcatgcacaggtaacagtat 179
| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 320 ga-cagtttactgataaagtccacacattaattctaagagtcatgcataggtaacagtat 378
Query: 180 ttctcagtttttacatattcaatcctagaataatttcatcattgatcattttttgttatt 239
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 379 ttctcagtttttacatattcaatcctagaataatttcatcattaatcattttttgttatt 438
Query: 240 tgcctcattctactatatatattctgaata-ttttattctacttttatattctattattc 298
||||||||||||||| |||||||||||||| ||||||| |||||||||||||||||||||
Sbjct: 439 tgcctcattctactacatatattctgaatatttttattttacttttatattctattattc 498
Query: 299 tattacatattatctataatatatattaaagaaacgcaagtgaagtatgtttgaatagca 358
||||| ||||||||||| |||||| |||||||||| ||||||||||||||||||||||||
Sbjct: 499 tattatatattatctatgatatattttaaagaaacccaagtgaagtatgtttgaatagca 558
Query: 359 aaatcattagctacaaaactgtgaccacaggaaaatattcttttaagataaaatctacaa 418
|||| ||||||||| ||||| |||| ||| ||||||||||||||||||||||||||||||
Sbjct: 559 aaataattagctacgaaactatgacgacaagaaaatattcttttaagataaaatctacaa 618
Query: 419 taagaaatatcctttcccattgacactaatattatttatattgatagtaattaaagatga 478
||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 619 taagaaataccctttcccattaacactaatattatttatattgatagtaattaaagatga 678
Query: 479 gtttggggtacacaactttaattccattacttgggaagcagaacgagatctttatgagtt 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 gtttggggtacacaactttaattccattacttgggaagcagaacgagatctttatgagtt 738
Query: 539 tgaggcctgcctgatctacatagtgagttttagga 573
|||||||||||||||||||||||||||||||||||
Sbjct: 739 tgaggcctgcctgatctacatagtgagttttagga 773
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 573
Length of database: 973
Length adjustment: 10
Effective length of query: 563
Effective length of database: 963
Effective search space: 542169
Effective search space used: 542169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
