GGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTGCTG
GCGAGATACTAGCTCGGGATAATATGGCACAGACTCCACAACTGGACTAC
AAAAACCGACCTTTCTATGTAGGTCTAAGATTTAAGTCAATGATGCTCAT
TGTACAGCAGCTATACCCTGGGTTCAATGTTTATAATAACCATTTGCATG
GGAAAGCTAGGCGACTATCTAGTAATCCAGCCCTTGTAATTGGCTTACAG
CCCAACAAAACCTTTTTCATAAAATGCTTTAAAAGTAAAAACAATCAATT
AAAAACAAGTCAAGCTCCTATGTTTAACTACCAGGAAACTGGAGCTCAGA
AGTTTTGTTCCTTTTTACAAAACGTTTACTAGGTTTCCTTACAGAATTCT
TTGCTTTCCCTGTGCATTTTTCTCCCTTAACGTGACCTCAGAAATGAGCA
GTGTACTGGCGATTTTTACATAGTAGGAGATCTTCTTGTGTGTGTATTGT
GCTGTTAGGTCACTGGTCTATTGTTTGTTTATTCATTTCTTTATCATTTT
TACCTTTTCAGAAAAAAAAAGACAGCATGTATGTGTGTGAAGACATTTAA
TATCAATCACACTATTCAATTCAAAACTGTAAAGATCTGAATCCCTGGAC
ATTAGTAAGCTACGGGTGAAGACAACTTGCAATATTTTAAAAAACAAGAT
TTTTCTCTAAAATGATCACTCCTCTGTCCCTTTCAAGAGAGATGATGCCA
GTCTCCACGGG

GAAGCCTGGCGGCCCCCCGCCGCCGACATTTAAGNGACACAAGAGGACCG
CGGATTCTCCGATAATACCATCCCNATTTTTTATGATGGAACGTTTTTTC
GNTTCTTTTCGTTTTCGTTTTTCGTTTTTTGGNNTGNNNNNGNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTTTTNNNTNTNNTTTTNN
NTNTTTTTNTTTTTTTTTTTTTTTTTTTTTTTTTNTTTTTTTTTTTTTTT
TTTTTTTTTTCCCCCCCCCCCCCCCTTNCCCCCCCCTCNTCCCCCCCCTT
CTCCCCCCNNCCCCCCCCCCTTCTTCCCCTTCTTTCCCCCCCCCCCCCCC
CCCCCCCCTCCCCCTTCCCCCCCTCCCCCCCCCCCCCCCCCCTCCTCCCC
CCCCCCCTCCCCCCCCCCNTCTCCCCTCCCCCCCCCTCCCCCCCCCCCCC
CCCCCCCTTCCCTCCCCTTCCCCCTTCCCCTCCCCCCCCCCCCTCCCCCC
CCCCTCTCCCCCCCTCCCCCCCCCCCCCCCCTCCCCCCCTTTCCNCCTCC
CCCTNTTCCCCCCCCCTCTTCCCTTCCNCCCCCCNNCCTCCCCCCCCCNT
CCCCCCCCCCTCCCCCCCCTCCTCTTCCCCCCCCC

Query= MSMg01no425_a19.b1 MSMg01no425_a19.b1 CHROMAT_FILE:
MSMg01no425_a19.b1 PHD_FILE: MSMg01no425_a19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:46:09 2005
         (631 letters)



>mm_chr9_84862333_84863365
          Length = 1033

 Score = 1185 bits (613), Expect = 0.0
 Identities = 623/627 (99%), Gaps = 2/627 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcttgctggcgagatactagctcgggataatatggcacagactccacaactggact 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 861 gaattcttgctggcgagatactagctcgggataatatggcacagactccacaactggact 802

                                                                       
Query: 65  acaaaaaccgacctttctatgtaggtctaagatttaagtcaatgatgctcattgtacagc 124
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 801 acaaaaaccgacctttctatgtaggtctaagatttcagtcaatgatgctcattgtacagc 742

                                                                       
Query: 125 agctataccctgggttcaatgtttataataaccatttgcatgggaaagctaggcgactat 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 agctataccctgggttcaatgtttataataaccatttgcatgggaaagctaggcgactat 682

                                                                       
Query: 185 ctagtaatccagcccttgtaattggcttacagcccaacaaaacctttttcataaaatgct 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ctagtaatccagcccttgtaattggcttacagcccaacaaaacctttttcataaaatgct 622

                                                                       
Query: 245 ttaaaagtaaaaacaatcaattaaaaacaagtcaagctcctatgtttaactaccaggaaa 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ttaaaagtaaaaacaatcaattaaaaacaagtcaagctcctatgtttaactaccaggaaa 562

                                                                       
Query: 305 ctggagctcagaagttttgttcctttttacaaaacgtttactaggtttccttacagaatt 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctggagctcagaagttttgttcctttttacaaaacgtttactaggtttccttacagaatt 502

                                                                       
Query: 365 ctttgctttccctgtgcatttttctcccttaacgtgacctcagaaatgagcagtgtactg 424
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctttgctttccttgtgcatttttctcccttaacgtgacctcagaaatgagcagtgtactg 442

                                                                       
Query: 425 gcgatttttacatagtaggagatcttcttgtgtgtgtattgtgctgttaggtcactggtc 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gcgatttttacatagtaggagatcttcttgtgtgtgtattgtgctgttaggtcactggtc 382

                                                                       
Query: 485 tattgtttgtttattcatttctttatcatttttaccttttcag--aaaaaaaaagacagc 542
           |||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||
Sbjct: 381 tattgtttgtttattcatttctttatcatttttaccttttcagaaaaaaaaaaagacagc 322

                                                                       
Query: 543 atgtatgtgtgtgaagacatttaatatcaatcacactattcaattcaaaactgtaaagat 602
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atgtatgtgtgtgaagacatttaatatcaatcacactattcaattcaaaactgtaaagat 262

                                      
Query: 603 ctgaatccctggacattagtaagctac 629
           |||||||||||||||||||||||||||
Sbjct: 261 ctgaatccctggacattagtaagctac 235


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 631
Length of database: 1033
Length adjustment: 10
Effective length of query: 621
Effective length of database: 1023
Effective search space:   635283
Effective search space used:   635283
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)